Toward Precision
Cancer Surveillance

DOE

Feb
6

The National Cancer Institute (NCI)’s Surveillance, Epidemiology, and End Results (SEER) Program is collaborating with the Department of Energy (DOE) on a 5-year pilot project that focuses on the use of high-performance computing to support cancer surveillance. Pilot 3 of the NCI-DOE Collaboration applies advanced computational capabilities and deep learning methods to population-based cancer data to understand the impact of new diagnostics, treatments, and other factors affecting patient outcomes.

Members and stakeholders of the collaboration came together for a two-day hackathon at the DOE’s Oak Ridge National Laboratory in Knoxville, Tennessee on September 10-11, 2019. The hackathon included a hands-on review of algorithms to improve efficiency of cancer registries and discussions of the next steps for implementation of the new tools in the registry workflow. The event also involved in-depth discussions on project focus areas, including privacy-aware computing, model... Read more

collaborationalgorithmDOEhigh-performance computinghackathontoolsrecurrencedata captureNLPclinical trials
Jun
5

An integrated team from NCI’s Surveillance, Epidemiology, and End Results (SEER) Program, four Department of Energy (DOE) labs—Oak Ridge National Laboratory (ORNL), Lawrence Livermore National Lab, Los Alamos National Lab, and Argonne National Lab—Information Management Systems (IMS), and four SEER registries met on March 28th–30th, 2017 to continue their work on the NCI-DOE Pilot 3 collaboration. This partnership will enhance cancer research using the DOE’s expertise in high performance computing and SEER’s expertise in cancer surveillance. The meeting focused on the progress made in Aim 1 and Aim 2 of the pilot as well as future goals for Aim 3.

The goal of Aim 1 is to create natural language processing (NLP) and machine learning tools that can accurately capture information from unstructured clinical text for expanded cancer surveillance data reporting. The collaboration team has completed development of a Clinical Document Annotation and Processing (CDAP) pipeline. This... Read more

collaborationDOEsurveillance dataCDAPNLP
Oct
18

NCI is collaborating with the U.S. Department of Energy (DOE) as part of the inter-agency coordination activities defined in the National Strategic Computing Initiative (NSCI) Presidential Order (July 29, 2015) and announced during Vice President Biden’s Cancer Moonshot Summit on June 29, 2016. The NCI-DOE collaboration has initiated three pilot efforts that will simultaneously impact the future of cancer research and guide future advances in scientific computing. These pilots will characterize and help overcome key precision oncology challenges at the molecular, patient, and population levels during the next three years.

DOEcollaborationpilotcancer surveillancenatural language processingalgorithmslinkagesmodeling