GSR: Simulator - GeneArtisan

Basic Package Attributes
AttributeValue
Title GeneArtisan
Short Description Simulation of Markers in Case-Control Study Designs
Long Description GeneArtisan: Simulation of Markers in Case-Control Study Designs Version 1.1 Release Date 22 May 2005. Note: This release implements an improved algorithm for simulating samples that allows larger intervals to be used and dramatically improves execution time. Check this page for updates and bug reports. Reference: Y. Wang and B. Rannala. 2005. In Silico Analysis of Disease-Association Mapping Strategies Using the Coalescent Process and Incorporating Ascertainment and Selection. American Journal of Human Genetics 76:1066-1073. Program Support: Questions about general issues/problems using this program can be directed to ygwang@ucdavis.edu .
Version 1.1
Project Started 2005
Last Release 15 years, 5 months ago
Homepagehttp://www.rannala.org/?page_id=241
Citations Wang Y, Rannala B, In silico analysis of disease-association mapping strategies using the coalescent process and incorporating ascertainment and selection., Am J Hum Genet, 06-01-2005 [ Abstract, cited in PMC ]
GSR Certification This package has been evaluated. No certificates were awarded at this time.
Last evaluated07-26-2018 (814 days ago)
Author verificationThe basic description provided was derived from a website or publications by the GSR team and has not yet been verified by the simulation author. To modify this entry or add more information, propose changes to this simulator.
Detailed Attributes
Attribute CategoryAttribute
Target
Type of Simulated DataGenotype at Genetic Markers,
VariationsBiallelic Marker, Single Nucleotide Variation,
Simulation MethodExact Coalescent,
Input
Data Type
File format
Output
Data TypeGenotype or Sequence,
Sequencing Reads
File Format
Sample TypeCase-control,
Phenotype
Trait TypeBinary or Qualitative,
DeterminantsSingle Genetic Marker,
Evolutionary Features
Demographic
Population Size ChangesConstant Size, Exponential Growth or Decline,
Gene Flow
Spatiality
Life Cycle
Mating SystemRandom Mating,
Fecundity
Natural Selection
Determinant
Models
RecombinationVarying Recombination Rates,
Mutation ModelsStepwise Mutation Model,
Events Allowed
Other
InterfaceCommand-line, Graphical User Interface,
Development
Tested PlatformsWindows, Mac OS X, Linux and Unix,
LanguageC or C++,
LicenseGNU Public License,
GSR Certification

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