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GSR: Simulator - AdmixSim2
| Attribute | Value |
|---|---|
| Title | AdmixSim2 |
| Short Description | AdmixSim2 is a forward-time simulator of population genetic data. |
| Long Description | AdmixSim2 is an individual-based forward-time simulation tool that can flexibly and efficiently simulate population genomics data under complex evolutionary scenarious. It is based on the extended Wright-Fisher model, and it implements many common evolutionary parameters to involve gene flow, natural selection, recombination, and mutation. AdmixSim2 can be used to simulte data of diocious or monoecious populations, autosomes, or sex chromosomes. |
| Version | 2.0 |
| Project Started | 2021 |
| Last Release | 3 years, 10 months ago |
| Homepage | https://github.com/Shuhua-Group/AdmixSim2 |
| Citations | Zhang R, Liu C, Yuan K, Ni X, Pan Y, Xu S, AdmixSim 2: a forward-time simulator for modeling complex population admixture., BMC Bioinformatics, Oct. 18, 2021 [ Abstract, cited in PMC ] |
| GSR Certification | ✔ Accessibility |
| Last evaluated | Feb. 14, 2022 (1284 days ago) |
| Author verification | The basic description provided was derived from a website or publications by the GSR team and has not yet been verified by the simulation author. To modify this entry or add more information, propose changes to this simulator. |
| Attribute Category | Attribute |
|---|---|
| Target | |
| Type of Simulated Data | Diploid DNA Sequence, Haploid DNA Sequence, |
| Variations | Biallelic Marker, Single Nucleotide Variation, |
| Simulation Method | Forward-time, |
| Input | |
| Data Type | |
| File format | |
| Output | |
| Data Type | |
| Sequencing Reads | |
| File Format | |
| Sample Type | |
| Phenotype | |
| Trait Type | |
| Determinants | |
| Evolutionary Features | |
| Demographic | |
| Population Size Changes | Constant Size, Exponential Growth or Decline, Logistic Growth, Bottleneck, Carrying Capacity, User Defined, |
| Gene Flow | |
| Spatiality | |
| Life Cycle | |
| Mating System | Random Mating, Monogamous, Polygamous, |
| Fecundity | |
| Natural Selection | |
| Determinant | |
| Models | |
| Recombination | |
| Mutation Models | |
| Events Allowed | |
| Other | |
| Interface | Command-line, |
| Development | |
| Tested Platforms | |
| Language | C or C++, Python, |
| License | |
| GSR Certification | Accessibility, Documentation, Support, |
Number of Primary Citations: 1
Number of Non-Primary Citations: 0
No example publication using AdmixSim2 has been provided.
Please propose new citations if you are aware of publications that use this software.