GSR: Simulator - ARGON
|Short Description||Fast, whole-genome simulation of the discrete time Wright-Fisher process|
|Long Description||ARGON simulates the discrete time Wright Fisher process (DTWF) backwards in time. The coalescent is equivalent to the DTWF process if the sample size is small compared to the effective population size, but will deviate from it as the sample size increases (Wakeley and Takahashi, MBE 2003; Bhaskar, Clark and Song, PNAS 2014). ARGON supports arbitrary demographic history, migration, variable mutation/recombination rates and gene conversion, and efficiently outputs pairwise identical-by-descent (IBD) sharing data.|
|Last Release||4 years, 9 months ago|
|Citations||Palamara PF, ARGON: fast, whole-genome simulation of the discrete time Wright-fisher process., Bioinformatics, 10-01-2016 [ Abstract, cited in PMC ]|
|GSR Certification||This simulator has not yet been evaluated for GSR Certification. Learn more about or request GSR Certification.|
|Author verification||The basic description provided was derived from a website or publications by the GSR team and has not yet been verified by the simulation author. To modify this entry or add more information, propose changes to this simulator.|
|Type of Simulated Data|
|Population Size Changes|
No example publication using ARGON has been provided.
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