GSR: Simulator - AsaruSim

AttributeValue
TitleAsaruSim
Short DescriptionNextflow workflow for simulating single-cell and spatial RNA-seq Nanopore long reads.
Long DescriptionAsaruSim simulates 10x-style single-cell and spatial RNA-seq Nanopore long-read experiments with a multi-stage workflow intended to mimic real experimental data.
Keywordssingle-cell RNA-seq; spatial RNA-seq; Nanopore; long reads; Nextflow; 10x Genomics; Python
Version2024-03-22
Homepagehttps://github.com/GenomiqueENS/AsaruSim
Citations
GSR Certification This simulator has not yet been evaluated for GSR Certification. Learn more about or request GSR Certification.
Author verificationThe basic description provided was derived from a website or publications by the GSR team and has not yet been verified by the simulation author. To modify this entry or add more information, propose changes to this simulator.
Attribute CategoryAttribute
Target
Type of Simulated DataSequencing Reads,
Variations
Simulation Method
Input
Data Type
File format
Output
Data TypeGenotype or Sequence,
Sequencing Reads
File FormatFasta or Fastq,
Sample Type
Phenotype
Trait Type
Determinants
Evolutionary Features
Demographic
Population Size Changes
Gene Flow
Spatiality
Life Cycle
Mating System
Fecundity
Natural Selection
Determinant
Models
Recombination
Mutation Models
Events Allowed
Other
InterfaceCommand-line, Script-based,
Development
Tested PlatformsLinux and Unix,
LanguagePython,
LicenseGNU Public License,
GSR Certification

Number of Primary Citations: 0

Number of Non-Primary Citations: 0

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