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GSR: Simulator - Boquila
| Attribute | Value |
|---|---|
| Title | Boquila |
| Short Description | NGS read simulator to eliminate read nucleotide bias in sequence analysis |
| Long Description | Boquila can be configured to generate reads from only specified regions of the reference genome. It also allows the use of input DNA sequencing to correct the bias due to the copy number variations in the genome. Boquila uses standard file formats for input and output data, and it can be easily integrated into any workflow for high-throughput sequencing applications. |
| Keywords | NGS, sequence read simulation, nucleotide content |
| Version | 0.6.1 |
| Project Started | 2023 |
| Homepage | https://github.com/CompGenomeLab/boquila |
| Citations | Akköse Ü, Adebali O, Boquila: NGS read simulator to eliminate read nucleotide bias in sequence analysis., Turk J Biol, Feb. 21, 2023 [ Abstract, cited in PMC ] |
| GSR Certification | This simulator has not yet been evaluated for GSR Certification. Learn more about or request GSR Certification. |
| Author verification | The basic description provided was derived from a website or publications by the GSR team and has not yet been verified by the simulation author. To modify this entry or add more information, propose changes to this simulator. |
| Attribute Category | Attribute |
|---|---|
| Target | |
| Type of Simulated Data | Sequencing Reads, |
| Variations | Single Nucleotide Variation, |
| Simulation Method | |
| Input | |
| Data Type | Reference genome, |
| File format | Fstat, |
| Output | |
| Data Type | |
| Sequencing Reads | Illumina, |
| File Format | Fasta or Fastq, |
| Sample Type | |
| Phenotype | |
| Trait Type | |
| Determinants | |
| Evolutionary Features | |
| Demographic | |
| Population Size Changes | |
| Gene Flow | |
| Spatiality | |
| Life Cycle | |
| Mating System | |
| Fecundity | |
| Natural Selection | |
| Determinant | |
| Models | |
| Recombination | |
| Mutation Models | |
| Events Allowed | |
| Other | |
| Interface | Command-line, |
| Development | |
| Tested Platforms | |
| Language | Other, |
| License | MIT, |
| GSR Certification |
Number of Primary Citations: 1
Number of Non-Primary Citations: 0
No example publication using Boquila has been provided.
Please propose new citations if you are aware of publications that use this software.