GSR: Simulator - cancerSimCraft

AttributeValue
TitlecancerSimCraft
Short DescriptionMulti-resolution cancer genome simulator with ground-truth tracking.
Long DescriptioncancerSimCraft simulates cancer genome data at clonal and single-cell resolution, including CNVs, SNVs, whole-genome duplications, and comprehensive ground truth for downstream benchmarking.
Keywordscancer genomics; single-cell genomics; clonal evolution; CNV; SNV; whole-genome duplication; ground truth
Version2024-11-25
Homepagehttps://github.com/haijingjin/cancerSimCraft
Citations
GSR Certification This simulator has not yet been evaluated for GSR Certification. Learn more about or request GSR Certification.
Author verificationThe basic description provided was derived from a website or publications by the GSR team and has not yet been verified by the simulation author. To modify this entry or add more information, propose changes to this simulator.
Attribute CategoryAttribute
Target
Type of Simulated DataHaploid DNA Sequence,
VariationsSingle Nucleotide Variation,
Simulation Method
Input
Data Type
File format
Output
Data TypeGenotype or Sequence,
Sequencing Reads
File Format
Sample Type
Phenotype
Trait Type
Determinants
Evolutionary Features
Demographic
Population Size Changes
Gene Flow
Spatiality
Life Cycle
Mating System
Fecundity
Natural Selection
Determinant
Models
Recombination
Mutation Models
Events Allowed
Other
InterfaceCommand-line,
Development
Tested PlatformsLinux and Unix,
Language
License
GSR Certification

Number of Primary Citations: 0

Number of Non-Primary Citations: 0

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