Protein Sequence Simulation Long Description (required)
CASS provides simulated protein (codon) sequences from a population genetic context with a protein structure-dependent explicit genotype-phenotype map. https://liberles.cst.temple.edu/Software/CASS/index.html liberles@uwyo.edu
Step 1: Use the attribute tree to add new attributes or remove pre-selected attributes to describe the simulator.
Every sub-attribute is selected Not all sub-attributes are selectedFill Clear Expand Collapse Reset
Summary of Proposed Changes Step 2: Review list of proposed attribute addition(s) and subtraction(s).
Can't Find the Attribute You Are Looking For? If you would like to propose an attribute that you cannot find in the tree above, or if you would like to add a clarification to one or more attributes for this simulator (e.g. a specific file format for attribute /Output/File Format/Other), please list them in the Additional Comment box of the Submit tab .
Summary of Proposed Changes Current Citations/Applications Grahnen JA and Liberles DA ,
CASS: Protein sequence simulation with explicit genotype-phenotype mapping, Trends in Evolutionary Biology ,
Trends in Evolutionary Biology ,
11-13-2012 ,
Primary Citation
[Pubmed ID: 22171550 ],
Grahnen JA, Nandakumar P, Kubelka J, Liberles DA ,
Biophysical and structural considerations for protein sequence evolution. ,
BMC Evol Biol ,
12-16-2011 ,
https://www.ncbi.nlm.nih.gov/pubmed/?term=22171550, , Application