GSR: Simulator - CoreSimul

Basic Package Attributes
AttributeValue
Title CoreSimul
Short Description a forward-in-time simulator of genome evolution for prokaryotes modeling homologous recombination
Long Description CoreSimul is a forward-in-time simulator of core genome evolution for prokaryotes modeling homologous recombination. Simulations are guided by a phylogenetic tree and incorporate different substitution models, including models of codon selection.
Last Release 1 year, 2 months ago
Homepagehttps://github.com/lbobay/CoreSimul
Citations Bobay LM, CoreSimul: a forward-in-time simulator of genome evolution for prokaryotes modeling homologous recombination., BMC Bioinformatics, 06-24-2020 [ Abstract, cited in PMC ]
GSR Certification This simulator has not yet been evaluated for GSR Certification. Learn more about or request GSR Certification.
Author verificationThe basic description provided was derived from a website or publications by the GSR team and has not yet been verified by the simulation author. To modify this entry or add more information, propose changes to this simulator.
Detailed Attributes
Attribute CategoryAttribute
Target
Type of Simulated DataHaploid DNA Sequence,
VariationsSingle Nucleotide Variation,
Simulation MethodPhylogenetic,
Input
Data Type
File format
Output
Data Type
Sequencing Reads
File Format
Sample Type
Phenotype
Trait Type
Determinants
Evolutionary Features
Demographic
Population Size Changes
Gene Flow
Spatiality
Life Cycle
Mating System
Fecundity
Natural Selection
DeterminantSingle-locus,
Models
RecombinationUniform,
Mutation Models
Events Allowed
Other
Interface
Development
Tested Platforms
LanguagePython,
License
GSR Certification

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