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GSR: Simulator - CuReSim
| Attribute | Value |
|---|---|
| Title | CuReSim |
| Short Description | A customized read simulator |
| Long Description | CuReSim (Customized Read Simulator) is a customized tool which generates synthetic New-Generation Sequencing reads, supporting read simulation for major letter-base sequencing platforms. CuReSim is developed in Java and is distributed as an executable jar file. Wrappers to integrate CuReSim in Galaxy are also available. |
| Version | 1.3 |
| Project Started | 2013 |
| Last Release | 8 years, 9 months ago |
| Homepage | http://www.pegase-biosciences.com/curesim-a-customized-read-simulator/ |
| Citations | Caboche S, Audebert C, Lemoine Y, Hot D, Comparison of mapping algorithms used in high-throughput sequencing: application to Ion Torrent data., BMC Genomics, 04-05-2014 [ Abstract, cited in PMC ] |
| GSR Certification | Accessibility |
| Last evaluated | 09-06-2018 (2046 days ago) |
| Author verification | The basic description provided was derived from a website or publications by the GSR team and has not yet been verified by the simulation author. To modify this entry or add more information, propose changes to this simulator. |
| Attribute Category | Attribute |
|---|---|
| Target | |
| Type of Simulated Data | Sequencing Reads, |
| Variations | Single Nucleotide Variation, Insertion and Deletion, |
| Simulation Method | |
| Input | |
| Data Type | |
| File format | |
| Output | |
| Data Type | |
| Sequencing Reads | Illumina, Roche 454, SOLiD, IonTorrent, |
| File Format | Fasta or Fastq, |
| Sample Type | |
| Phenotype | |
| Trait Type | |
| Determinants | |
| Evolutionary Features | |
| Demographic | |
| Population Size Changes | |
| Gene Flow | |
| Spatiality | |
| Life Cycle | |
| Mating System | |
| Fecundity | |
| Natural Selection | |
| Determinant | |
| Models | |
| Recombination | |
| Mutation Models | |
| Events Allowed | |
| Other | |
| Interface | |
| Development | |
| Tested Platforms | |
| Language | Java, |
| License | |
| GSR Certification | Documentation, |
Number of Primary Citations: 1
Number of Non-Primary Citations: 1
The following 1 publications are selected examples of applications that used CuReSim.
2023
Anthony RM, Tagliani E, Nikolayevskyy V, de Zwaan R, Mulder A, Kamst M, Ködmön C, van der Werf MJ, Cirillo D, van Soolingen D, et al., Experiences from 4 Years of Organization of an External Quality Assessment for Mycobacterium tuberculosis Whole-Genome Sequencing in the European Union/European Economic Area., Microbiol Spectr, 02-14-2023 [Abstract]