GSR: Simulator - CuReSim
| Attribute | Value |
|---|---|
| Title | CuReSim |
| Short Description | A customized read simulator |
| Long Description | CuReSim (Customized Read Simulator) is a customized tool which generates synthetic New-Generation Sequencing reads, supporting read simulation for major letter-base sequencing platforms. CuReSim is developed in Java and is distributed as an executable jar file. Wrappers to integrate CuReSim in Galaxy are also available. |
| Version | 1.3 |
| Project Started | 2013 |
| Last Release | 5 years, 3 months ago |
| Homepage | http://www.pegase-biosciences.com/curesim-a-customized-read-simulator/ |
| Citations | Caboche S, Audebert C, Lemoine Y, Hot D, Comparison of mapping algorithms used in high-throughput sequencing: application to Ion Torrent data., BMC Genomics, 04-05-2014 [ Abstract, cited in PMC ] |
| GSR Certification | Accessibility |
| Last evaluated | 09-06-2018 (772 days ago) |
| Author verification | The basic description provided was derived from a website or publications by the GSR team and has not yet been verified by the simulation author. To modify this entry or add more information, propose changes to this simulator. |
| Attribute Category | Attribute |
|---|---|
| Target | |
| Type of Simulated Data | Sequencing Reads, |
| Variations | Single Nucleotide Variation, Insertion and Deletion, |
| Simulation Method | |
| Input | |
| Data Type | |
| File format | |
| Output | |
| Data Type | |
| Sequencing Reads | Illumina, Roche 454, SOLiD, IonTorrent, |
| File Format | Fasta or Fastq, |
| Sample Type | |
| Phenotype | |
| Trait Type | |
| Determinants | |
| Evolutionary Features | |
| Demographic | |
| Population Size Changes | |
| Gene Flow | |
| Spatiality | |
| Life Cycle | |
| Mating System | |
| Fecundity | |
| Natural Selection | |
| Determinant | |
| Models | |
| Recombination | |
| Mutation Models | |
| Events Allowed | |
| Other | |
| Interface | |
| Development | |
| Tested Platforms | |
| Language | Java, |
| License | |
| GSR Certification | Documentation, |
No example publication using CuReSim has been provided.
Please propose new citations if you are aware of publications that use this software.