GSR: Simulator - CuReSim

Basic Package Attributes
AttributeValue
Title CuReSim
Short Description A customized read simulator
Long Description CuReSim (Customized Read Simulator) is a customized tool which generates synthetic New-Generation Sequencing reads, supporting read simulation for major letter-base sequencing platforms. CuReSim is developed in Java and is distributed as an executable jar file. Wrappers to integrate CuReSim in Galaxy are also available.
Version 1.3
Project Started 2013
Last Release 5 years, 3 months ago
Homepagehttp://www.pegase-biosciences.com/curesim-a-customized-read-simulator/
Citations Caboche S, Audebert C, Lemoine Y, Hot D, Comparison of mapping algorithms used in high-throughput sequencing: application to Ion Torrent data., BMC Genomics, 04-05-2014 [ Abstract, cited in PMC ]
GSR Certification

Accessibility
Documentation
Application
Support

Last evaluated09-06-2018 (772 days ago)
Author verificationThe basic description provided was derived from a website or publications by the GSR team and has not yet been verified by the simulation author. To modify this entry or add more information, propose changes to this simulator.
Detailed Attributes
Attribute CategoryAttribute
Target
Type of Simulated DataSequencing Reads,
VariationsSingle Nucleotide Variation, Insertion and Deletion,
Simulation Method
Input
Data Type
File format
Output
Data Type
Sequencing ReadsIllumina, Roche 454, SOLiD, IonTorrent,
File FormatFasta or Fastq,
Sample Type
Phenotype
Trait Type
Determinants
Evolutionary Features
Demographic
Population Size Changes
Gene Flow
Spatiality
Life Cycle
Mating System
Fecundity
Natural Selection
Determinant
Models
Recombination
Mutation Models
Events Allowed
Other
Interface
Development
Tested Platforms
LanguageJava,
License
GSR CertificationDocumentation,

No example publication using CuReSim has been provided.

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