GSR: Simulator - CuReSim
Attribute | Value |
---|---|
Title | CuReSim |
Short Description | A customized read simulator |
Long Description | CuReSim (Customized Read Simulator) is a customized tool which generates synthetic New-Generation Sequencing reads, supporting read simulation for major letter-base sequencing platforms. CuReSim is developed in Java and is distributed as an executable jar file. Wrappers to integrate CuReSim in Galaxy are also available. |
Version | 1.3 |
Project Started | 2013 |
Last Release | 5 years, 10 months ago |
Homepage | http://www.pegase-biosciences.com/curesim-a-customized-read-simulator/ |
Citations | Caboche S, Audebert C, Lemoine Y, Hot D, Comparison of mapping algorithms used in high-throughput sequencing: application to Ion Torrent data., BMC Genomics, 04-05-2014 [ Abstract, cited in PMC ] |
GSR Certification | Accessibility |
Last evaluated | 09-06-2018 (958 days ago) |
Author verification | The basic description provided was derived from a website or publications by the GSR team and has not yet been verified by the simulation author. To modify this entry or add more information, propose changes to this simulator. |
Attribute Category | Attribute |
---|---|
Target | |
Type of Simulated Data | Sequencing Reads, |
Variations | Single Nucleotide Variation, Insertion and Deletion, |
Simulation Method | |
Input | |
Data Type | |
File format | |
Output | |
Data Type | |
Sequencing Reads | Illumina, Roche 454, SOLiD, IonTorrent, |
File Format | Fasta or Fastq, |
Sample Type | |
Phenotype | |
Trait Type | |
Determinants | |
Evolutionary Features | |
Demographic | |
Population Size Changes | |
Gene Flow | |
Spatiality | |
Life Cycle | |
Mating System | |
Fecundity | |
Natural Selection | |
Determinant | |
Models | |
Recombination | |
Mutation Models | |
Events Allowed | |
Other | |
Interface | |
Development | |
Tested Platforms | |
Language | Java, |
License | |
GSR Certification | Documentation, |
No example publication using CuReSim has been provided.
Please propose new citations if you are aware of publications that use this software.