GSR: Simulator - discoal
Attribute | Value |
---|---|
Title | discoal |
Short Description | flexible coalescent simulations with selection |
Long Description | discoal is a coalescent simulation program capable of simulating models with recombination, selective sweeps, and demographic changes including population splits and admixture events. |
Project Started | 2017 |
Last Release | 3 years, 9 months ago |
Homepage | https://github.com/kr-colab/discoal |
Citations | Kern AD, Schrider DR, Discoal: flexible coalescent simulations with selection., Bioinformatics, 12-15-2016 [ Abstract, cited in PMC ] |
GSR Certification | ✔ Accessibility |
Last evaluated | 07-08-2021 (1010 days ago) |
Author verification | The basic description provided was derived from a website or publications by the GSR team and has not yet been verified by the simulation author. To modify this entry or add more information, propose changes to this simulator. |
Attribute Category | Attribute |
---|---|
Target | |
Type of Simulated Data | Haploid DNA Sequence, |
Variations | Single Nucleotide Variation, |
Simulation Method | Standard Coalescent, |
Input | |
Data Type | |
File format | |
Output | |
Data Type | |
Sequencing Reads | |
File Format | |
Sample Type | |
Phenotype | |
Trait Type | |
Determinants | |
Evolutionary Features | |
Demographic | |
Population Size Changes | Constant Size, Exponential Growth or Decline, Logistic Growth, Bottleneck, Carrying Capacity, User Defined, |
Gene Flow | |
Spatiality | |
Life Cycle | |
Mating System | |
Fecundity | |
Natural Selection | |
Determinant | Single-locus, |
Models | |
Recombination | Uniform, Varying Recombination Rates, Gene Conversion Allowed, |
Mutation Models | |
Events Allowed | |
Other | |
Interface | |
Development | |
Tested Platforms | |
Language | C or C++, |
License | GNU Public License, |
GSR Certification | Accessibility, Documentation, Application, Support, |
Number of Primary Citations: 1
Number of Non-Primary Citations: 2
The following 2 publications are selected examples of applications that used discoal.
2023
Lauterbur ME, Munch K, Enard D, Versatile Detection of Diverse Selective Sweeps with Flex-Sweep., Mol Biol Evol, 06-01-2023 [Abstract]
Arnab SP, Amin MR, DeGiorgio M, Uncovering Footprints of Natural Selection Through Spectral Analysis of Genomic Summary Statistics., Mol Biol Evol, 07-05-2023 [Abstract]