GSR: Simulator - EvolveAGene

Basic Package Attributes
AttributeValue
Title EvolveAGene
Short Description A realistic coding sequence simulation program that separates mutation from selection and allows the user to set selection conditions
Long Description EvolveAGene 3 is a realistic coding sequence simulation program that separates mutation from selection and allows the user to set selection conditions, including variable regions of selection intensity within the sequence and variation in intensity of selection over branches. Variation includes base substitutions, insertions, and deletions.
Version 3.06
Project Started 2008
Last Release 10 years, 5 months ago
Homepagehttps://sourceforge.net/projects/evolveagene/?source=navbar
Citations Hall BG, Simulating DNA coding sequence evolution with EvolveAGene 3., Mol Biol Evol, 04-01-2008 [ Abstract, cited in PMC ]
GSR Certification

Accessibility
Documentation
Application
Support

Last evaluated07-24-2019 (450 days ago)
Detailed Attributes
Attribute CategoryAttribute
Target
Type of Simulated DataHaploid DNA Sequence, Protein Sequence,
VariationsSingle Nucleotide Variation, Amino acid variation, Insertion and Deletion,
Simulation MethodPhylogenetic,
Input
Data TypeAncestral Sequence,
File format
Output
Data TypeGenotype or Sequence, Individual Relationship,
Sequencing Reads
File FormatFasta or Fastq, Phylip, NEXUS,
Sample Type
Phenotype
Trait Type
Determinants
Evolutionary Features
Demographic
Population Size Changes
Gene Flow
Spatiality
Life Cycle
Mating System
Fecundity
Natural Selection
DeterminantCodon-based,
ModelsDirectional Selection,
Recombination
Mutation ModelsCodon and Amino Acid Models, Indels and Others, Heterogeneity among Sites,
Events Allowed
Other
InterfaceCommand-line,
Development
Tested PlatformsWindows (Tested only on windows xp), Mac OS X, Linux and Unix (Tested only on ubuntu),
LanguagePerl,
License
GSR CertificationDocumentation,

No example publication using EvolveAGene has been provided.

Please propose new citations if you are aware of publications that use this software.


Propose changes to this simulator