GSR: Simulator - EvolveAGene
| Attribute | Value |
|---|---|
| Title | EvolveAGene |
| Short Description | A realistic coding sequence simulation program that separates mutation from selection and allows the user to set selection conditions |
| Long Description | EvolveAGene 3 is a realistic coding sequence simulation program that separates mutation from selection and allows the user to set selection conditions, including variable regions of selection intensity within the sequence and variation in intensity of selection over branches. Variation includes base substitutions, insertions, and deletions. |
| Version | 3.06 |
| Project Started | 2008 |
| Last Release | 10 years, 5 months ago |
| Homepage | https://sourceforge.net/projects/evolveagene/?source=navbar |
| Citations | Hall BG, Simulating DNA coding sequence evolution with EvolveAGene 3., Mol Biol Evol, 04-01-2008 [ Abstract, cited in PMC ] |
| GSR Certification | Accessibility |
| Last evaluated | 07-24-2019 (450 days ago) |
| Attribute Category | Attribute |
|---|---|
| Target | |
| Type of Simulated Data | Haploid DNA Sequence, Protein Sequence, |
| Variations | Single Nucleotide Variation, Amino acid variation, Insertion and Deletion, |
| Simulation Method | Phylogenetic, |
| Input | |
| Data Type | Ancestral Sequence, |
| File format | |
| Output | |
| Data Type | Genotype or Sequence, Individual Relationship, |
| Sequencing Reads | |
| File Format | Fasta or Fastq, Phylip, NEXUS, |
| Sample Type | |
| Phenotype | |
| Trait Type | |
| Determinants | |
| Evolutionary Features | |
| Demographic | |
| Population Size Changes | |
| Gene Flow | |
| Spatiality | |
| Life Cycle | |
| Mating System | |
| Fecundity | |
| Natural Selection | |
| Determinant | Codon-based, |
| Models | Directional Selection, |
| Recombination | |
| Mutation Models | Codon and Amino Acid Models, Indels and Others, Heterogeneity among Sites, |
| Events Allowed | |
| Other | |
| Interface | Command-line, |
| Development | |
| Tested Platforms | Windows (Tested only on windows xp), Mac OS X, Linux and Unix (Tested only on ubuntu), |
| Language | Perl, |
| License | |
| GSR Certification | Documentation, |
No example publication using EvolveAGene has been provided.
Please propose new citations if you are aware of publications that use this software.