[Pubmed ID: 22962361],
Griebel T, Zacher B, Ribeca P, Raineri E, Lacroix V, Guigó R, Sammeth M,
Modelling and simulating generic RNA-Seq experiments with the flux simulator.,
Nucleic Acids Res,
11-01-2012,
https://www.ncbi.nlm.nih.gov/pubmed/?term=22962361,Primary Citation
[Pubmed ID: 28784092],
Zhang C, Zhang B, Lin LL, Zhao S,
Evaluation and comparison of computational tools for RNA-seq isoform quantification.,
BMC Genomics,
08-07-2017,
https://www.ncbi.nlm.nih.gov/pubmed/?term=28784092,, Application
[Pubmed ID: 28984183],
Liu Y, Wu P, Zhou J, Johnson-Pais TL, Lai Z, Chowdhury WH, Rodriguez R, Chen Y,
XBSeq2: a fast and accurate quantification of differential expression and differential polyadenylation.,
BMC Bioinformatics,
10-03-2017,
https://www.ncbi.nlm.nih.gov/pubmed/?term=28984183,, Application
[Pubmed ID: 29136203],
Zhou J, Ma S, Wang D, Zeng J, Jiang T,
FreePSI: an alignment-free approach to estimating exon-inclusion ratios without a reference transcriptome.,
Nucleic Acids Res,
01-25-2018,
https://www.ncbi.nlm.nih.gov/pubmed/?term=29136203,, Application
[Pubmed ID: 29176847],
Liu R, Dickerson J,
Strawberry: Fast and accurate genome-guided transcript reconstruction and quantification from RNA-Seq.,
PLoS Comput Biol,
11-01-2017,
https://www.ncbi.nlm.nih.gov/pubmed/?term=29176847,, Application
[Pubmed ID: 29280736],
Pai AA, Henriques T, McCue K, Burkholder A, Adelman K, Burge CB,
The kinetics of pre-mRNA splicing in the <i>Drosophila</i> genome and the influence of gene architecture.,
Elife,
12-27-2017,
https://www.ncbi.nlm.nih.gov/pubmed/?term=29280736,, Application