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GSR: Simulator - fwdpp
| Attribute | Value |
|---|---|
| Title | fwdpp |
| Short Description | A C++ template library for implementing efficient forward simulations. |
| Long Description | Fwdpp is a C++11 library intended to help implement forward-time population genetic simulations. |
| Version | 0.2.5 |
| Project Started | 2014 |
| Last Release | 10 years, 10 months ago |
| Homepage | https://github.com/molpopgen/fwdpp |
| Citations | Thornton KR, A C++ Template Library for Efficient Forward-Time Population Genetic Simulation of Large Populations., Genetics, June 20, 2014 [ Abstract, cited in PMC ] |
| GSR Certification | ✔ Accessibility |
| Last evaluated | Nov. 10, 2017 (2865 days ago) |
| Attribute Category | Attribute |
|---|---|
| Target | |
| Type of Simulated Data | |
| Variations | |
| Simulation Method | Standard Coalescent, Exact Coalescent, Forward-time, Resample Existing Data, Phylogenetic, Gene dropping, Other, |
| Input | |
| Data Type | |
| File format | |
| Output | |
| Data Type | |
| Sequencing Reads | |
| File Format | |
| Sample Type | |
| Phenotype | |
| Trait Type | |
| Determinants | |
| Evolutionary Features | |
| Demographic | |
| Population Size Changes | |
| Gene Flow | |
| Spatiality | |
| Life Cycle | |
| Mating System | |
| Fecundity | |
| Natural Selection | |
| Determinant | |
| Models | |
| Recombination | |
| Mutation Models | |
| Events Allowed | |
| Other | |
| Interface | |
| Development | |
| Tested Platforms | |
| Language | |
| License | |
| GSR Certification | Accessibility, Support, |
Number of Primary Citations: 1
Number of Non-Primary Citations: 6
The following 6 publications are selected examples of applications that used fwdpp.
2017
Sanjak JS, Long AD, Thornton KR, A Model of Compound Heterozygous, Loss-of-Function Alleles Is Broadly Consistent with Observations from Complex-Disease GWAS Datasets., PLoS Genet, Jan. 1, 2017 [Abstract]
Schrider DR, Kern AD, Soft Sweeps Are the Dominant Mode of Adaptation in the Human Genome., Mol Biol Evol, Aug. 1, 2017 [Abstract]
Zhou Y, Massonnet M, Sanjak JS, Cantu D, Gaut BS, Evolutionary genomics of grape (<i>Vitis vinifera</i> ssp. <i>vinifera</i>) domestication., Proc Natl Acad Sci U S A, Oct. 31, 2017 [Abstract]
2016
Beissinger TM, Wang L, Crosby K, Durvasula A, Hufford MB, Ross-Ibarra J, Recent demography drives changes in linked selection across the maize genome., Nat Plants, June 13, 2016 [Abstract]
2014
Baldwin-Brown JG, Long AD, Thornton KR, The power to detect quantitative trait loci using resequenced, experimentally evolved populations of diploid, sexual organisms., Mol Biol Evol, April 1, 2014 [Abstract]
2013
Thornton KR, Foran AJ, Long AD, Properties and modeling of GWAS when complex disease risk is due to non-complementing, deleterious mutations in genes of large effect., PLoS Genet, Jan. 1, 2013 [Abstract]