GSR: Simulator - fwdpp

Basic Package Attributes
AttributeValue
Title fwdpp
Short Description A C++ template library for implementing efficient forward simulations.
Long Description Fwdpp is a C++11 library intended to help implement forward-time population genetic simulations.
Version 0.2.5
Project Started 2014
Last Release 5 years, 10 months ago
Homepagehttp://molpopgen.github.io/fwdpp/
Citations Thornton KR, A C++ Template Library for Efficient Forward-Time Population Genetic Simulation of Large Populations., Genetics, 06-20-2014 [ Abstract, cited in PMC ]
GSR Certification

Accessibility
Documentation
Application
Support

Last evaluated11-10-2017 (1072 days ago)
Detailed Attributes
Attribute CategoryAttribute
Target
Type of Simulated Data
Variations
Simulation MethodStandard Coalescent, Exact Coalescent, Forward-time, Resample Existing Data, Phylogenetic, Gene dropping, Other,
Input
Data Type
File format
Output
Data Type
Sequencing Reads
File Format
Sample Type
Phenotype
Trait Type
Determinants
Evolutionary Features
Demographic
Population Size Changes
Gene Flow
Spatiality
Life Cycle
Mating System
Fecundity
Natural Selection
Determinant
Models
Recombination
Mutation Models
Events Allowed
Other
Interface
Development
Tested Platforms
Language
License
GSR CertificationAccessibility, Support,

The following 6 publications are selected examples of applications that used fwdpp.

2017

Sanjak JS, Long AD, Thornton KR, A Model of Compound Heterozygous, Loss-of-Function Alleles Is Broadly Consistent with Observations from Complex-Disease GWAS Datasets., PLoS Genet, 01-01-2017 [Abstract]

Schrider DR, Kern AD, Soft Sweeps Are the Dominant Mode of Adaptation in the Human Genome., Mol Biol Evol, 08-01-2017 [Abstract]

Zhou Y, Massonnet M, Sanjak JS, Cantu D, Gaut BS, Evolutionary genomics of grape (<i>Vitis vinifera</i> ssp. <i>vinifera</i>) domestication., Proc Natl Acad Sci U S A, 10-31-2017 [Abstract]

2016

Beissinger TM, Wang L, Crosby K, Durvasula A, Hufford MB, Ross-Ibarra J, Recent demography drives changes in linked selection across the maize genome., Nat Plants, 06-13-2016 [Abstract]

2014

Baldwin-Brown JG, Long AD, Thornton KR, The power to detect quantitative trait loci using resequenced, experimentally evolved populations of diploid, sexual organisms., Mol Biol Evol, 04-01-2014 [Abstract]

2013

Thornton KR, Foran AJ, Long AD, Properties and modeling of GWAS when complex disease risk is due to non-complementing, deleterious mutations in genes of large effect., PLoS Genet, 01-01-2013 [Abstract]


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