GSR: Simulator - GemSIM

Basic Package Attributes
AttributeValue
Title GemSIM
Short Description Next generation sequencing read simulator
Long Description GemSIM is a software package for generating realistic simulated next generation sequencing reads with quality score values. Both Illumina and Roche/454 reads (single or paired end) can be simulated using empirically derived error models.
Version 1.6
Project Started 2013
Last Release 7 years, 9 months ago
Homepagehttp://sourceforge.net/projects/gemsim/
Citations McElroy KE, Luciani F, Thomas T, GemSIM: general, error-model based simulator of next-generation sequencing data., BMC Genomics, 02-15-2012 [ Abstract, cited in PMC ]
GSR Certification

✔ Accessibility
✔ Documentation
Application
Support

Last evaluated06-13-2019 (574 days ago)
Detailed Attributes
Attribute CategoryAttribute
Target
Type of Simulated DataDiploid DNA Sequence, Haploid DNA Sequence, Mitochondrial DNA, Sequencing Reads,
VariationsSingle Nucleotide Variation, Insertion and Deletion, Inversion and Rearrangement, Genotype or Sequencing Error, Other,
Simulation MethodOther,
Input
Data TypeOther,
File formatOther,
Output
Data TypeGenotype or Sequence,
Sequencing ReadsOther,
File FormatFasta or Fastq,
Sample TypeOther,
Phenotype
Trait Type
Determinants
Evolutionary Features
Demographic
Population Size Changes
Gene Flow
Spatiality
Life Cycle
Mating System
Fecundity
Natural Selection
Determinant
Models
Recombination
Mutation Models
Events Allowed
OtherPhenogenetic, Polygenic background,
InterfaceCommand-line,
Development
Tested PlatformsMac OS X, Linux and Unix,
LanguagePython,
LicenseGNU Public License,
GSR CertificationAccessibility, Documentation,

No example publication using GemSIM has been provided.

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