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GSR: Simulator - GeneArtisan
The GeneArtisan package is not yet public.
| Attribute | Value |
|---|---|
| Title | GeneArtisan |
| Short Description | Simulation of Markers in Case-Control Study Designs |
| Long Description | GeneArtisan: Simulation of Markers in Case-Control Study Designs Version 1.1 Release Date 22 May 2005. Note: This release implements an improved algorithm for simulating samples that allows larger intervals to be used and dramatically improves execution time. Check this page for updates and bug reports. Reference: Y. Wang and B. Rannala. 2005. In Silico Analysis of Disease-Association Mapping Strategies Using the Coalescent Process and Incorporating Ascertainment and Selection. American Journal of Human Genetics 76:1066-1073. Program Support: Questions about general issues/problems using this program can be directed to ygwang@ucdavis.edu . |
| Version | 1.1 |
| Project Started | 2005 |
| Last Release | 20 years, 8 months ago |
| Homepage | http://www.rannala.org/?page_id=241 |
| Citations | Wang Y, Rannala B, In silico analysis of disease-association mapping strategies using the coalescent process and incorporating ascertainment and selection., Am J Hum Genet, June 1, 2005 [ Abstract, cited in PMC ] |
| GSR Certification | This package has been evaluated. No certificates were awarded at this time. |
| Last evaluated | July 26, 2018 (2686 days ago) |
| Author verification | The basic description provided was derived from a website or publications by the GSR team and has not yet been verified by the simulation author. To modify this entry or add more information, propose changes to this simulator. |
| Attribute Category | Attribute |
|---|---|
| Target | |
| Type of Simulated Data | Genotype at Genetic Markers, |
| Variations | Biallelic Marker, Single Nucleotide Variation, |
| Simulation Method | Exact Coalescent, |
| Input | |
| Data Type | |
| File format | |
| Output | |
| Data Type | Genotype or Sequence, |
| Sequencing Reads | |
| File Format | |
| Sample Type | Case-control, |
| Phenotype | |
| Trait Type | Binary or Qualitative, |
| Determinants | Single Genetic Marker, |
| Evolutionary Features | |
| Demographic | |
| Population Size Changes | Constant Size, Exponential Growth or Decline, |
| Gene Flow | |
| Spatiality | |
| Life Cycle | |
| Mating System | Random Mating, |
| Fecundity | |
| Natural Selection | |
| Determinant | |
| Models | |
| Recombination | Varying Recombination Rates, |
| Mutation Models | Stepwise Mutation Model, |
| Events Allowed | |
| Other | |
| Interface | Command-line, Graphical User Interface, |
| Development | |
| Tested Platforms | Windows, Mac OS X, Linux and Unix, |
| Language | C or C++, |
| License | GNU Public License, |
| GSR Certification |
Number of Primary Citations: 1
Number of Non-Primary Citations: 0
No example publication using GeneArtisan has been provided.
Please propose new citations if you are aware of publications that use this software.