GSR: Simulator - Genomic Variant Simulator

Basic Package Attributes
AttributeValue
Title Genomic Variant Simulator
Short Description generating simulated single nucleotide and indel variants
Long Description The script for generating simulated single nucleotide and indel variants as well as the parameter files used to simulate the variants for the above manuscript are available for download here. This software is released under a MIT license (license text available from the ZIP-archive). Please see the README file contained in the ZIP-archive for further information about the software.
Last Release 7 years, 7 months ago
Homepagehttps://cadd.gs.washington.edu/simulator
Citations Kircher M, Witten DM, Jain P, O'Roak BJ, Cooper GM, Shendure J, A general framework for estimating the relative pathogenicity of human genetic variants., Nat Genet, 03-01-2014 [ Abstract, cited in PMC ]
GSR Certification

Accessibility
Documentation
Application
Support

Last evaluated05-13-2021 (130 days ago)
Author verificationThe basic description provided was derived from a website or publications by the GSR team and has not yet been verified by the simulation author. To modify this entry or add more information, propose changes to this simulator.
Detailed Attributes
Attribute CategoryAttribute
Target
Type of Simulated DataDiploid DNA Sequence,
VariationsSingle Nucleotide Variation,
Simulation MethodResample Existing Data,
Input
Data Type
File format
Output
Data Type
Sequencing Reads
File Format
Sample Type
Phenotype
Trait Type
Determinants
Evolutionary Features
Demographic
Population Size Changes
Gene Flow
Spatiality
Life Cycle
Mating System
Fecundity
Natural Selection
Determinant
Models
Recombination
Mutation Models
Events Allowed
Other
InterfaceCommand-line,
Development
Tested Platforms
LanguagePython,
LicenseOther,
GSR CertificationAccessibility, Documentation,

No example publication using Genomic Variant Simulator has been provided.

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