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GSR: Simulator - GPOPSIM
| Attribute | Value |
|---|---|
| Title | GPOPSIM |
| Short Description | GPOPSIM is a simulation tool for pedigree, phenotypes, and genome data. |
| Long Description | GPOPSIM is a simulation tool for pedigree, phenotypes, and genome data. The software uses a variety of population and genome structures as well as trait genetic architectures. GROPSIM also provides parameter settings for a wide variety of disciplines. The package is capable of simulating multiple genetically correlated traits with given genetic parameters along with underlying genetic architectures. |
| Version | v2 |
| Project Started | 2020 |
| Last Release | 2 years, 8 months ago |
| Homepage | https://github.com/SCAU-AnimalGenetics/GPOPSIMv2 |
| Citations | Zhang Z, Li X, Ding X, Li J, Zhang Q, GPOPSIM: a simulation tool for whole-genome genetic data., BMC Genet, Feb. 5, 2015 [ Abstract, cited in PMC ] |
| GSR Certification | Accessibility |
| Last evaluated | Sept. 30, 2022 (1056 days ago) |
| Author verification | The basic description provided was derived from a website or publications by the GSR team and has not yet been verified by the simulation author. To modify this entry or add more information, propose changes to this simulator. |
| Attribute Category | Attribute |
|---|---|
| Target | |
| Type of Simulated Data | Diploid DNA Sequence, Haploid DNA Sequence, |
| Variations | Biallelic Marker, Single Nucleotide Variation, |
| Simulation Method | Forward-time, |
| Input | |
| Data Type | |
| File format | |
| Output | |
| Data Type | |
| Sequencing Reads | |
| File Format | |
| Sample Type | |
| Phenotype | |
| Trait Type | |
| Determinants | |
| Evolutionary Features | |
| Demographic | |
| Population Size Changes | Constant Size, User Defined, |
| Gene Flow | |
| Spatiality | |
| Life Cycle | |
| Mating System | Random Mating, |
| Fecundity | |
| Natural Selection | |
| Determinant | |
| Models | |
| Recombination | |
| Mutation Models | |
| Events Allowed | |
| Other | |
| Interface | Command-line, |
| Development | |
| Tested Platforms | Windows, Linux and Unix, |
| Language | Other, |
| License | |
| GSR Certification | Support, |
Number of Primary Citations: 1
Number of Non-Primary Citations: 0
No example publication using GPOPSIM has been provided.
Please propose new citations if you are aware of publications that use this software.