GSR: Simulator - GrgPhenoSim

AttributeValue
TitleGrgPhenoSim
Short DescriptionFast phenotype simulator for genotype representation graphs.
Long DescriptionGrgPhenoSim simulates quantitative and binary phenotypes on genotype representation graphs, designed for scalable biobank-size phenotype simulation and faster performance than tree-sequence trait simulators in supported settings.
Keywordsphenotype simulation; genotype representation graph; GRG; biobank; quantitative trait; binary trait; Python
Version2025-01-03
Homepagehttps://github.com/aprilweilab/grg_pheno_sim
Citations
GSR Certification This simulator has not yet been evaluated for GSR Certification. Learn more about or request GSR Certification.
Author verificationThe basic description provided was derived from a website or publications by the GSR team and has not yet been verified by the simulation author. To modify this entry or add more information, propose changes to this simulator.
Attribute CategoryAttribute
Target
Type of Simulated DataGenotype at Genetic Markers, Sequencing Reads,
Variations
Simulation Method
Input
Data Type
File format
Output
Data TypeGenotype or Sequence,
Sequencing Reads
File FormatFasta or Fastq,
Sample Type
Phenotype
Trait Type
DeterminantsMultiple Genetic Markers,
Evolutionary Features
Demographic
Population Size Changes
Gene Flow
Spatiality
Life Cycle
Mating System
Fecundity
Natural Selection
Determinant
Models
Recombination
Mutation Models
Events Allowed
Other
InterfaceCommand-line, Script-based,
Development
Tested PlatformsLinux and Unix,
LanguagePython,
LicenseGNU Public License,
GSR Certification

Number of Primary Citations: 0

Number of Non-Primary Citations: 0

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