GSR: Simulator - HAPNEST

AttributeValue
TitleHAPNEST
Short DescriptionLarge-scale synthetic genotype and phenotype dataset generator.
Long DescriptionHAPNEST efficiently generates diverse individual-level synthetic genotypes and phenotypes at biobank scale, preserving key statistical properties of real data and supporting synthetic datasets for polygenic risk score evaluation.
Keywordsgenotype simulation; phenotype simulation; synthetic data; biobank scale; polygenic risk score; Julia; C
Version3.0
Homepagehttps://github.com/intervene-EU-H2020/synthetic_data
Citations
GSR Certification This simulator has not yet been evaluated for GSR Certification. Learn more about or request GSR Certification.
Author verificationThe basic description provided was derived from a website or publications by the GSR team and has not yet been verified by the simulation author. To modify this entry or add more information, propose changes to this simulator.
Attribute CategoryAttribute
Target
Type of Simulated DataGenotype at Genetic Markers,
VariationsSingle Nucleotide Variation,
Simulation Method
Input
Data TypeEmpirical,
File format
Output
Data TypeGenotype or Sequence,
Sequencing Reads
File Format
Sample Type
Phenotype
Trait Type
DeterminantsMultiple Genetic Markers,
Evolutionary Features
Demographic
Population Size Changes
Gene Flow
Spatiality
Life Cycle
Mating System
Fecundity
Natural Selection
Determinant
Models
Recombination
Mutation Models
Events Allowed
Other
InterfaceCommand-line, Script-based,
Development
Tested PlatformsLinux and Unix,
LanguageOther,
LicenseGNU Public License,
GSR Certification

Number of Primary Citations: 0

Number of Non-Primary Citations: 0

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