GSR: Simulator - HapSim
| Attribute | Value |
|---|---|
| Title | HapSim |
| Short Description | A simulation tool for generating haplotype data with pre-specified allele frequencies and LD coefficients |
| Long Description | Package for haplotype data simulation. Haplotypes are generated such that their allele frequencies and linkage disequilibrium coefficients match those estimated from an input data set |
| Version | 0.2 |
| Project Started | 2005 |
| Last Release | 15 years, 4 months ago |
| Homepage | http://cran.r-project.org/web/packages/hapsim/index.html |
| Citations | Montana G, HapSim: a simulation tool for generating haplotype data with pre-specified allele frequencies and LD coefficients., Bioinformatics, 12-01-2005 [ Abstract, cited in PMC ] |
| GSR Certification | ✔ Accessibility |
| Last evaluated | 01-24-2019 (817 days ago) |
| Author verification | The basic description provided was derived from a website or publications by the GSR team and has not yet been verified by the simulation author. To modify this entry or add more information, propose changes to this simulator. |
| Attribute Category | Attribute |
|---|---|
| Target | |
| Type of Simulated Data | Haploid DNA Sequence (Haplotypes), |
| Variations | Biallelic Marker, |
| Simulation Method | Other, |
| Input | |
| Data Type | Allele Frequencies, Other (Ld information), |
| File format | |
| Output | |
| Data Type | Genotype or Sequence (Haplotypes), |
| Sequencing Reads | |
| File Format | |
| Sample Type | |
| Phenotype | |
| Trait Type | |
| Determinants | |
| Evolutionary Features | |
| Demographic | |
| Population Size Changes | |
| Gene Flow | |
| Spatiality | |
| Life Cycle | |
| Mating System | |
| Fecundity | |
| Natural Selection | |
| Determinant | |
| Models | |
| Recombination | |
| Mutation Models | |
| Events Allowed | |
| Other | |
| Interface | Command-line (R), |
| Development | |
| Tested Platforms | Windows, Mac OS X, Linux and Unix, Solaris, |
| Language | R, |
| License | GNU Public License, |
| GSR Certification | Accessibility, Documentation, |
No example publication using HapSim has been provided.
Please propose new citations if you are aware of publications that use this software.