GSR: Simulator - HapSim
Attribute | Value |
---|---|
Title | HapSim |
Short Description | A simulation tool for generating haplotype data with pre-specified allele frequencies and LD coefficients |
Long Description | Package for haplotype data simulation. Haplotypes are generated such that their allele frequencies and linkage disequilibrium coefficients match those estimated from an input data set |
Version | 0.2 |
Project Started | 2005 |
Last Release | 15 years, 1 month ago |
Homepage | http://cran.r-project.org/web/packages/hapsim/index.html |
Citations | Montana G, HapSim: a simulation tool for generating haplotype data with pre-specified allele frequencies and LD coefficients., Bioinformatics, 12-01-2005 [ Abstract, cited in PMC ] |
GSR Certification | ✔ Accessibility |
Last evaluated | 01-24-2019 (714 days ago) |
Author verification | The basic description provided was derived from a website or publications by the GSR team and has not yet been verified by the simulation author. To modify this entry or add more information, propose changes to this simulator. |
Attribute Category | Attribute |
---|---|
Target | |
Type of Simulated Data | Haploid DNA Sequence (Haplotypes), |
Variations | Biallelic Marker, |
Simulation Method | Other, |
Input | |
Data Type | Allele Frequencies, Other (Ld information), |
File format | |
Output | |
Data Type | Genotype or Sequence (Haplotypes), |
Sequencing Reads | |
File Format | |
Sample Type | |
Phenotype | |
Trait Type | |
Determinants | |
Evolutionary Features | |
Demographic | |
Population Size Changes | |
Gene Flow | |
Spatiality | |
Life Cycle | |
Mating System | |
Fecundity | |
Natural Selection | |
Determinant | |
Models | |
Recombination | |
Mutation Models | |
Events Allowed | |
Other | |
Interface | Command-line (R), |
Development | |
Tested Platforms | Windows, Mac OS X, Linux and Unix, Solaris, |
Language | R, |
License | GNU Public License, |
GSR Certification | Accessibility, Documentation, |
No example publication using HapSim has been provided.
Please propose new citations if you are aware of publications that use this software.