GSR: Simulator - HAPSIMU

Basic Package Attributes
AttributeValue
Title HAPSIMU
Short Description A program that simulates heterogeneous populations with various known and controllable structures under the continuous migration model or the discrete model
Long Description HAPSIMU, a program based on real haplotype data from the HapMap ENCODE project, can simulate heterogeneous populations with various known and controllable structures under the continuous migration model or the discrete model. Moreover, both qualitative and quantitative traits can be simulated using additive genetic model with various genetic parameters designated by users.
Version 1.0
Project Started 2008
Last Release 12 years, 7 months ago
Homepagehttp://l.web.umkc.edu/liujian/
Citations Zhang F, Liu J, Chen J, Deng HW, HAPSIMU: a genetic simulation platform for population-based association studies., BMC Bioinformatics, 08-05-2008 [ Abstract, cited in PMC ]
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Last evaluated02-06-2019 (619 days ago)
Author verificationThe basic description provided was derived from a website or publications by the GSR team and has not yet been verified by the simulation author. To modify this entry or add more information, propose changes to this simulator.
Detailed Attributes
Attribute CategoryAttribute
Target
Type of Simulated DataGenotype at Genetic Markers,
VariationsSingle Nucleotide Variation,
Simulation MethodForward-time (Evolve forward-in-time during population admixture), Resample Existing Data,
Input
Data TypeEmpirical (The hapmap encode project),
File format
Output
Data TypeGenotype or Sequence,
Sequencing Reads
File FormatOther (Admixmap, plink, strat, gx, and eigensoft.),
Sample Type
Phenotype
Trait TypeBinary or Qualitative, Quantitative,
DeterminantsSingle Genetic Marker, Multiple Genetic Markers,
Evolutionary Features
Demographic
Population Size ChangesConstant Size,
Gene FlowAdmixed Population,
Spatiality
Life Cycle
Mating System
Fecundity
Natural Selection
Determinant
Models
RecombinationUniform,
Mutation Models
Events Allowed
Other
InterfaceGraphical User Interface,
Development
Tested PlatformsWindows,
LanguageC or C++,
LicenseOther (Free for non-commercial usage),
GSR CertificationDocumentation,

No example publication using HAPSIMU has been provided.

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