GSR: Simulator - haptools

AttributeValue
Titlehaptools
Short DescriptionToolkit for ancestry- and haplotype-aware genotype and phenotype simulation/analysis.
Long Descriptionhaptools provides tools for simulating admixed genomes, visualizing admixture tracks, and simulating haplotype- and local-ancestry-specific phenotype effects for complex trait analysis.
Keywordshaplotype; admixture; local ancestry; genotype simulation; phenotype simulation; complex traits; Python
Versionv0.6.2
Homepagehttps://haptools.readthedocs.io
Citations
GSR Certification This simulator has not yet been evaluated for GSR Certification. Learn more about or request GSR Certification.
Author verificationThe basic description provided was derived from a website or publications by the GSR team and has not yet been verified by the simulation author. To modify this entry or add more information, propose changes to this simulator.
Attribute CategoryAttribute
Target
Type of Simulated DataGenotype at Genetic Markers, Haploid DNA Sequence, Sequencing Reads,
Variations
Simulation Method
Input
Data TypeEmpirical, Reference genome,
File format
Output
Data TypeGenotype or Sequence,
Sequencing Reads
File FormatFasta or Fastq,
Sample Type
Phenotype
Trait Type
DeterminantsMultiple Genetic Markers,
Evolutionary Features
Demographic
Population Size Changes
Gene Flow
Spatiality
Life Cycle
Mating System
Fecundity
Natural Selection
Determinant
Models
Recombination
Mutation Models
Events Allowed
Other
InterfaceCommand-line, Script-based,
Development
Tested PlatformsLinux and Unix,
LanguagePython,
LicenseMIT,
GSR Certification

Number of Primary Citations: 0

Number of Non-Primary Citations: 0

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