GSR: Simulator - IBDsim

Basic Package Attributes
AttributeValue
Title IBDsim
Short Description IBDSim is a computer package for the simulation of genotypic data under general isolation by distance models.
Long Description IBDSim can consider a large panel of subdivided population models representing discrete subpopulations as well as a large continuous population. Many dispersal distributions, with different tails, can be considered as well as various heterogeneities in space and time of the demographic parameters. For examples of various applications see Leblois et al. (2003), Leblois et al. (2004), Leblois et al. (2006), Rousset & Leblois (2007). The program runs on PC under Windows, Mac or Linux systems, and we provide the source code that can be easily compiled under any system using C++ ISO compiler.
Version 2.0
Project Started 2011
Last Release 8 years, 7 months ago
Homepagehttp://raphael.leblois.free.fr/
Citations Leblois R, Estoup A, Rousset F, IBDSim: a computer program to simulate genotypic data under isolation by distance., Mol Ecol Resour, 01-01-2009 [ Abstract, cited in PMC ]
GSR Certification

Accessibility
Documentation
Application
Support

Last evaluated01-24-2019 (632 days ago)
Author verificationThe basic description provided was derived from a website or publications by the GSR team and has not yet been verified by the simulation author. To modify this entry or add more information, propose changes to this simulator.
Detailed Attributes
Attribute CategoryAttribute
Target
Type of Simulated DataGenotype at Genetic Markers, Diploid DNA Sequence, Haploid DNA Sequence,
VariationsBiallelic Marker, Multiallelic Marker, Single Nucleotide Variation, Microsatellite,
Simulation MethodExact Coalescent,
Input
Data Type
File format
Output
Data TypeGenotype or Sequence, Demographic, Diversity Measures,
Sequencing Reads
File FormatGenepop, MIGRATE, NEXUS,
Sample Type
Phenotype
Trait Type
Determinants
Evolutionary Features
Demographic
Population Size ChangesConstant Size, Exponential Growth or Decline, Bottleneck,
Gene FlowStepping Stone Models, Island Models, Other (Isolation by distance),
Spatiality
Life CycleDiscrete Generation Model,
Mating SystemRandom Mating,
Fecundity
Natural Selection
Determinant
Models
Recombination
Mutation ModelsTwo-allele Mutation Model, Markov DNA Evolution Models, k-Allele Model, Infinite-allele Model, Infinite-sites Model, Stepwise Mutation Model, Heterogeneity among Sites, Others,
Events AllowedPopulation Merge and Split, Varying Demographic Features, Varying Genetic Features,
Other
InterfaceCommand-line, Graphical User Interface,
Development
Tested PlatformsWindows, Mac OS X, Linux and Unix, Others,
LanguageC or C++, Python (For interface),
LicenseGNU Public License,
GSR CertificationAccessibility, Documentation,

No example publication using IBDsim has been provided.

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