GSR: Simulator - Indelible

Basic Package Attributes
AttributeValue
Title Indelible
Short Description A powerful and flexible simulator of biological evolution
Long Description INDELible is a new, portable, and flexible application for biological sequence simulation that combines many features in the same place for the first time. Using a length-dependent model of indel formation it can simulate evolution of multi-partitioned nucleotide, amino-acid, or codon data sets through the processes of insertion, deletion, and substitution in continuous time.
Version 1.0.3
Project Started 2009
Last Release 10 years, 5 months ago
Homepagehttp://abacus.gene.ucl.ac.uk/software/indelible/
Citations Fletcher W, Yang Z, INDELible: a flexible simulator of biological sequence evolution., Mol Biol Evol, 08-01-2009 [ Abstract, cited in PMC ]
GSR Certification

Accessibility
Documentation
Application
Support

Author verificationThe basic description provided was derived from a website or publications by the GSR team and has not yet been verified by the simulation author. To modify this entry or add more information, propose changes to this simulator.
Detailed Attributes
Attribute CategoryAttribute
Target
Type of Simulated DataHaploid DNA Sequence, Protein Sequence,
VariationsBiallelic Marker, Amino acid variation, Insertion and Deletion,
Simulation MethodPhylogenetic,
Input
Data TypeAncestral Sequence,
File format
Output
Data TypeGenotype or Sequence,
Sequencing Reads
File FormatFasta or Fastq,
Sample Type
Phenotype
Trait Type
Determinants
Evolutionary Features
Demographic
Population Size Changes
Gene Flow
Spatiality
Life Cycle
Mating System
Fecundity
Natural Selection
Determinant
Models
Recombination
Mutation ModelsCodon and Amino Acid Models, Indels and Others, Heterogeneity among Sites,
Events Allowed
Other
InterfaceCommand-line,
Development
Tested PlatformsWindows, Mac OS X, Linux and Unix,
LanguageC or C++,
LicenseGNU Public License,
GSR CertificationAccessibility, Documentation,

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