GSR: Simulator - jakealope

AttributeValue
Titlejakealope
Short DescriptionR package for phylogenomic and high-throughput sequencing simulation.
Long Descriptionjackalope simulates variants from reference genomes and simulates Illumina and PacBio reads. It can use FASTA references or simulated genomes, supports summary statistics, phylogenies, VCF input, and coalescent simulations, and writes standard file formats.
Keywordsphylogenomics; read simulation; Illumina; PacBio; VCF; coalescent simulation; R package
Versionv1.1.6
Homepagehttps://jackalope.lucasnell.com
Citations
GSR Certification This simulator has not yet been evaluated for GSR Certification. Learn more about or request GSR Certification.
Author verificationThe basic description provided was derived from a website or publications by the GSR team and has not yet been verified by the simulation author. To modify this entry or add more information, propose changes to this simulator.
Attribute CategoryAttribute
Target
Type of Simulated DataHaploid DNA Sequence, Sequencing Reads,
VariationsSingle Nucleotide Variation,
Simulation Method
Input
Data TypeReference genome,
File format
Output
Data TypeGenotype or Sequence,
Sequencing Reads
File FormatFasta or Fastq,
Sample Type
Phenotype
Trait Type
Determinants
Evolutionary Features
Demographic
Population Size Changes
Gene Flow
Spatiality
Life Cycle
Mating System
Fecundity
Natural Selection
Determinant
Models
Recombination
Mutation Models
Events Allowed
Other
InterfaceCommand-line, Script-based,
Development
Tested PlatformsLinux and Unix,
LanguageR,
LicenseMIT,
GSR Certification

Number of Primary Citations: 0

Number of Non-Primary Citations: 0

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