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GSR: Simulator - kernalPop
| Attribute | Value |
|---|---|
| Title | kernalPop |
| Short Description | A spatially explicit population genetic simulation engine |
| Long Description | Individual-based, spatially explicit models provide a mechanism to understand distributions of individuals on the landscape; however, few models have been coupled with population genetics. The primary benefits of such a combination is to assess performance of populationgenetic estimators in realistic situations. KERNELPOP represents a flexible framework to implement almost any arbitrary population-genetic and demographic model in a spatially explicit context using a variety of dispersal kernels. Estimates of type I error associated with genome scans in metapopulations are provided as an illustration of this software’s utility |
| Project Started | 2007 |
| Last Release | 15 years, 9 months ago |
| Homepage | http://cran.r-project.org/src/contrib/Archive/kernelPop/ |
| Citations | Strand AE, Niehaus JM, kernelpop, a spatially explicit population genetic simulation engine, Molecular Ecology Notes, June 2, 2007 [ Abstract ] |
| GSR Certification | ✔ Accessibility |
| Last evaluated | Jan. 18, 2023 (970 days ago) |
| Author verification | The basic description provided was derived from a website or publications by the GSR team and has not yet been verified by the simulation author. To modify this entry or add more information, propose changes to this simulator. |
| Attribute Category | Attribute |
|---|---|
| Target | |
| Type of Simulated Data | Genotype at Genetic Markers, |
| Variations | Biallelic Marker, |
| Simulation Method | Forward-time, |
| Input | |
| Data Type | |
| File format | Arlequin, Genepop, MIGRATE, |
| Output | |
| Data Type | Genotype or Sequence, Demographic, |
| Sequencing Reads | |
| File Format | Arlequin, Genepop, |
| Sample Type | |
| Phenotype | |
| Trait Type | |
| Determinants | |
| Evolutionary Features | |
| Demographic | |
| Population Size Changes | Carrying Capacity, |
| Gene Flow | |
| Spatiality | |
| Life Cycle | User-Defined transition matrices, |
| Mating System | Random Mating, Age- or Stage-Specific, |
| Fecundity | Influenced by Environment, |
| Natural Selection | |
| Determinant | |
| Models | |
| Recombination | |
| Mutation Models | Stepwise Mutation Model, Heterogeneity among Sites, |
| Events Allowed | Varying Demographic Features, Change of Mating Systems, |
| Other | |
| Interface | Command-line, Script-based, |
| Development | |
| Tested Platforms | Windows, Mac OS X, Linux and Unix, |
| Language | R, |
| License | GNU Public License, |
| GSR Certification | Accessibility, Documentation, |
Number of Primary Citations: 1
Number of Non-Primary Citations: 0
No example publication using kernalPop has been provided.
Please propose new citations if you are aware of publications that use this software.