GSR: Simulator - lcSimVCF

AttributeValue
TitlelcSimVCF
Short DescriptionSimulator for low-coverage whole-genome sequencing VCF/genotype-likelihood data.
Long DescriptionlcSimVCF uses high-coverage whole-genome sequencing VCFs to simulate low-coverage whole-genome sequencing genotype likelihood distributions, with a multivariate Gaussian mixture modeling approach.
Keywordslow-coverage WGS; lcWGS; VCF; genotype likelihood; Gaussian mixture model; variant simulation
Homepagehttps://doi.org/10.1186/s12859-025-06184-3
Citations
GSR Certification This simulator has not yet been evaluated for GSR Certification. Learn more about or request GSR Certification.
Author verificationThe basic description provided was derived from a website or publications by the GSR team and has not yet been verified by the simulation author. To modify this entry or add more information, propose changes to this simulator.
Attribute CategoryAttribute
Target
Type of Simulated DataGenotype at Genetic Markers, Haploid DNA Sequence, Sequencing Reads,
VariationsSingle Nucleotide Variation,
Simulation Method
Input
Data TypeReference genome,
File format
Output
Data TypeGenotype or Sequence,
Sequencing Reads
File Format
Sample Type
Phenotype
Trait Type
Determinants
Evolutionary Features
Demographic
Population Size Changes
Gene Flow
Spatiality
Life Cycle
Mating System
Fecundity
Natural Selection
Determinant
Models
Recombination
Mutation Models
Events Allowed
Other
Interface
Development
Tested Platforms
Language
License
GSR Certification

Number of Primary Citations: 0

Number of Non-Primary Citations: 0

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