GSR: Simulator - MetaPopGen
Attribute | Value |
---|---|
Title | MetaPopGen |
Short Description | Simulates genetics in large size metapopulations |
Long Description | MetaPopGen is a population genetics simulator. Features included in the model are age-structure, monoecious and dioecious (or separate sexes) life-cycles, mutation, dispersal and selection. All demographic parameters can be genotype-, sex-, age-, deme- and time-dependent. MetaPopGen is therefore indicated to study large populations and very complex demographic scenarios. |
Version | 0.0.2 |
Project Started | 2014 |
Last Release | 6 years ago |
Homepage | https://sites.google.com/site/marcoandrello/metapopgen |
Citations | Andrello M, Manel S, MetaPopGen: an r package to simulate population genetics in large size metapopulations., Mol Ecol Resour, 01-13-2015 [ Abstract, cited in PMC ] |
GSR Certification | ✔ Accessibility |
Last evaluated | 02-06-2020 (337 days ago) |
Attribute Category | Attribute |
---|---|
Target | |
Type of Simulated Data | Genotype at Genetic Markers, |
Variations | Biallelic Marker, Multiallelic Marker, Single Nucleotide Variation, |
Simulation Method | Forward-time, Other, |
Input | |
Data Type | Allele Frequencies, |
File format | Program Specific, Other, |
Output | |
Data Type | Demographic, Diversity Measures, |
Sequencing Reads | Other, |
File Format | Program Specific, |
Sample Type | |
Phenotype | |
Trait Type | |
Determinants | |
Evolutionary Features | |
Demographic | |
Population Size Changes | Constant Size, Carrying Capacity, User Defined, |
Gene Flow | User-defined Matrix, |
Spatiality | |
Life Cycle | Discrete Generation Model, Age structured, Overlapping Generation, User-Defined transition matrices, |
Mating System | Random Mating, |
Fecundity | Constant Number, Randomly Distributed, Individually Determined, Influenced by Environment, |
Natural Selection | |
Determinant | Single-locus, |
Models | Other, |
Recombination | |
Mutation Models | k-Allele Model, |
Events Allowed | Varying Demographic Features, |
Other | |
Interface | Command-line, Script-based, |
Development | |
Tested Platforms | |
Language | R, |
License | |
GSR Certification | Accessibility, Documentation, Support, |
No example publication using MetaPopGen has been provided.
Please propose new citations if you are aware of publications that use this software.