GSR: Simulator - MetaPopGen
| Attribute | Value |
|---|---|
| Title | MetaPopGen |
| Short Description | Simulates genetics in large size metapopulations |
| Long Description | MetaPopGen is a population genetics simulator. Features included in the model are age-structure, monoecious and dioecious (or separate sexes) life-cycles, mutation, dispersal and selection. All demographic parameters can be genotype-, sex-, age-, deme- and time-dependent. MetaPopGen is therefore indicated to study large populations and very complex demographic scenarios. |
| Version | 0.0.2 |
| Project Started | 2014 |
| Last Release | 6 years ago |
| Homepage | https://sites.google.com/site/marcoandrello/metapopgen |
| Citations | Andrello M, Manel S, MetaPopGen: an r package to simulate population genetics in large size metapopulations., Mol Ecol Resour, 01-13-2015 [ Abstract, cited in PMC ] |
| GSR Certification | ✔ Accessibility |
| Last evaluated | 02-06-2020 (337 days ago) |
| Attribute Category | Attribute |
|---|---|
| Target | |
| Type of Simulated Data | Genotype at Genetic Markers, |
| Variations | Biallelic Marker, Multiallelic Marker, Single Nucleotide Variation, |
| Simulation Method | Forward-time, Other, |
| Input | |
| Data Type | Allele Frequencies, |
| File format | Program Specific, Other, |
| Output | |
| Data Type | Demographic, Diversity Measures, |
| Sequencing Reads | Other, |
| File Format | Program Specific, |
| Sample Type | |
| Phenotype | |
| Trait Type | |
| Determinants | |
| Evolutionary Features | |
| Demographic | |
| Population Size Changes | Constant Size, Carrying Capacity, User Defined, |
| Gene Flow | User-defined Matrix, |
| Spatiality | |
| Life Cycle | Discrete Generation Model, Age structured, Overlapping Generation, User-Defined transition matrices, |
| Mating System | Random Mating, |
| Fecundity | Constant Number, Randomly Distributed, Individually Determined, Influenced by Environment, |
| Natural Selection | |
| Determinant | Single-locus, |
| Models | Other, |
| Recombination | |
| Mutation Models | k-Allele Model, |
| Events Allowed | Varying Demographic Features, |
| Other | |
| Interface | Command-line, Script-based, |
| Development | |
| Tested Platforms | |
| Language | R, |
| License | |
| GSR Certification | Accessibility, Documentation, Support, |
No example publication using MetaPopGen has been provided.
Please propose new citations if you are aware of publications that use this software.