GSR: Simulator - MetaPopGen

Basic Package Attributes
AttributeValue
Title MetaPopGen
Short Description Simulates genetics in large size metapopulations
Long Description MetaPopGen is a population genetics simulator. Features included in the model are age-structure, monoecious and dioecious (or separate sexes) life-cycles, mutation, dispersal and selection. All demographic parameters can be genotype-, sex-, age-, deme- and time-dependent. MetaPopGen is therefore indicated to study large populations and very complex demographic scenarios.
Version 0.0.2
Project Started 2014
Last Release 5 years, 9 months ago
Homepagehttps://sites.google.com/site/marcoandrello/metapopgen
Citations Andrello M, Manel S, MetaPopGen: an r package to simulate population genetics in large size metapopulations., Mol Ecol Resour, 01-13-2015 [ Abstract, cited in PMC ]
GSR Certification

Accessibility
Documentation
Application
Support

Last evaluated02-06-2020 (253 days ago)
Detailed Attributes
Attribute CategoryAttribute
Target
Type of Simulated DataGenotype at Genetic Markers,
VariationsBiallelic Marker, Multiallelic Marker, Single Nucleotide Variation,
Simulation MethodForward-time, Other,
Input
Data TypeAllele Frequencies,
File formatProgram Specific, Other,
Output
Data TypeDemographic, Diversity Measures,
Sequencing ReadsOther,
File FormatProgram Specific,
Sample Type
Phenotype
Trait Type
Determinants
Evolutionary Features
Demographic
Population Size ChangesConstant Size, Carrying Capacity, User Defined,
Gene FlowUser-defined Matrix,
Spatiality
Life CycleDiscrete Generation Model, Age structured, Overlapping Generation, User-Defined transition matrices,
Mating SystemRandom Mating,
FecundityConstant Number, Randomly Distributed, Individually Determined, Influenced by Environment,
Natural Selection
DeterminantSingle-locus,
ModelsOther,
Recombination
Mutation Modelsk-Allele Model,
Events AllowedVarying Demographic Features,
Other
InterfaceCommand-line, Script-based,
Development
Tested Platforms
LanguageR,
License
GSR CertificationAccessibility, Documentation, Support,

No example publication using MetaPopGen has been provided.

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