GSR: Simulator - MOSim

AttributeValue
Title MOSim
Short Description An R package for the simulation of multi-omic experiments that mimic regulatory mechanisms within the cell.
Long Description MOSim is an R package for the simulation of multi-omic experiments that mimic regulatory mechanisms within the cell. Gene expression (RNA-seq count data) is the central data type simulated by MOSim, while the rest of available omic data types provide gene regulation information and include ATAC-seq (DNase-seq), ChIP-seq, small RNA-seq and Methyl-seq. In addition to these omics, regulation by transcription factors (TFs) can also be modeled.
Keywords multi-omic
Version 1.6.0
Project Started 2019
Homepagehttps://www.bioconductor.org/packages/release/bioc/html/MOSim.html
Citations
GSR Certification

✔ Accessibility
✔ Documentation
Application
Support

Last evaluatedSept. 30, 2021 (1445 days ago)
Author verificationThe basic description provided was derived from a website or publications by the GSR team and has not yet been verified by the simulation author. To modify this entry or add more information, propose changes to this simulator.
Attribute CategoryAttribute
Target
Type of Simulated DataDiploid DNA Sequence, RNA,
VariationsSingle Nucleotide Variation,
Simulation MethodResample Existing Data,
Input
Data Type
File format
Output
Data Type
Sequencing Reads
File Format
Sample Type
Phenotype
Trait Type
Determinants
Evolutionary Features
Demographic
Population Size Changes
Gene Flow
Spatiality
Life Cycle
Mating System
Fecundity
Natural Selection
Determinant
Models
Recombination
Mutation Models
Events Allowed
Other
Interface
Development
Tested Platforms
LanguageR,
LicenseGNU Public License,
GSR CertificationAccessibility, Documentation,

Number of Primary Citations: 0

Number of Non-Primary Citations: 0

No example publication using MOSim has been provided.

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