GSR: Simulator - MOSim
Attribute | Value |
---|---|
Title | MOSim |
Short Description | An R package for the simulation of multi-omic experiments that mimic regulatory mechanisms within the cell. |
Long Description | MOSim is an R package for the simulation of multi-omic experiments that mimic regulatory mechanisms within the cell. Gene expression (RNA-seq count data) is the central data type simulated by MOSim, while the rest of available omic data types provide gene regulation information and include ATAC-seq (DNase-seq), ChIP-seq, small RNA-seq and Methyl-seq. In addition to these omics, regulation by transcription factors (TFs) can also be modeled. |
Keywords | multi-omic |
Version | 1.6.0 |
Project Started | 2019 |
Homepage | https://www.bioconductor.org/packages/release/bioc/html/MOSim.html |
Citations | |
GSR Certification | ✔ Accessibility |
Last evaluated | 09-30-2021 (926 days ago) |
Author verification | The basic description provided was derived from a website or publications by the GSR team and has not yet been verified by the simulation author. To modify this entry or add more information, propose changes to this simulator. |
Attribute Category | Attribute |
---|---|
Target | |
Type of Simulated Data | Diploid DNA Sequence, RNA, |
Variations | Single Nucleotide Variation, |
Simulation Method | Resample Existing Data, |
Input | |
Data Type | |
File format | |
Output | |
Data Type | |
Sequencing Reads | |
File Format | |
Sample Type | |
Phenotype | |
Trait Type | |
Determinants | |
Evolutionary Features | |
Demographic | |
Population Size Changes | |
Gene Flow | |
Spatiality | |
Life Cycle | |
Mating System | |
Fecundity | |
Natural Selection | |
Determinant | |
Models | |
Recombination | |
Mutation Models | |
Events Allowed | |
Other | |
Interface | |
Development | |
Tested Platforms | |
Language | R, |
License | GNU Public License, |
GSR Certification | Accessibility, Documentation, |
Number of Primary Citations: 0
Number of Non-Primary Citations: 0
No example publication using MOSim has been provided.
Please propose new citations if you are aware of publications that use this software.