GSR: Simulator - msnsam
Attribute | Value |
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Title | msnsam |
Short Description | Hudson's ms with variable sample size across loci |
Long Description | This version is the October 2007 version of the ms code with the added ability to include the number of samples (nsam) as a tbs argument. Please see Hudson's website for details on ms as well as installation instructions, but please email me for questions or bug reports, as bugs are likely mine and NOT part of the original code. The primary motivation for this is to allow efficient simulation of datasets with unequal sampling across loci. Running this version of ms using sample size as a tbs argument appears to be much faster than running an independent ms run for each of many loci. |
Last Release | 10 years, 11 months ago |
Homepage | https://github.com/rossibarra/msnsam |
Citations | Ross-Ibarra J, Wright SI, Foxe JP, Kawabe A, DeRose-Wilson L, Gos G, Charlesworth D, Gaut BS, Patterns of polymorphism and demographic history in natural populations of Arabidopsis lyrata., PLoS One, 06-11-2008 [ Abstract, cited in PMC ] |
GSR Certification | Accessibility |
Last evaluated | 07-16-2021 (980 days ago) |
Author verification | The basic description provided was derived from a website or publications by the GSR team and has not yet been verified by the simulation author. To modify this entry or add more information, propose changes to this simulator. |
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Sequencing Reads | |
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Natural Selection | |
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Recombination | |
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GSR Certification | Documentation, Application, Support, |
Number of Primary Citations: 1
Number of Non-Primary Citations: 2
The following 2 publications are selected examples of applications that used msnsam.
2023
Rougemont Q, Huber B, Martin SH, Whibley A, Estrada C, Solano D, Orpet R, McMillan WO, Frérot B, Joron M, Subtle Introgression Footprints at the End of the Speciation Continuum in a Clade of Heliconius Butterflies., Mol Biol Evol, 07-05-2023 [Abstract]
2021
Wolf E, Gaquerel E, Scharmann M, Yant L, Koch MA, Evolutionary footprints of a cold relic in a rapidly warming world., Elife, 12-21-2021 [Abstract]