Hudson's ms with variable sample size across loci Long Description (required)
This version is the October 2007 version of the ms code with the added ability to include the number of samples (nsam) as a tbs argument. Please see Hudson's website for details on ms as well as installation instructions, but please email me for questions or bug reports, as bugs are likely mine and NOT part of the original code.
The primary motivation for this is to allow efficient simulation of datasets with unequal sampling across loci. Running this version of ms using sample size as a tbs argument appears to be much faster than running an independent ms run for each of many loci. https://github.com/rossibarra/msnsam
Step 1: Use the attribute tree to add new attributes or remove pre-selected attributes to describe the simulator.
Every sub-attribute is selected Not all sub-attributes are selectedFill Clear Expand Collapse Reset
Summary of Proposed Changes Step 2: Review list of proposed attribute addition(s) and subtraction(s).
Can't Find the Attribute You Are Looking For? If you would like to propose an attribute that you cannot find in the tree above, or if you would like to add a clarification to one or more attributes for this simulator (e.g. a specific file format for attribute /Output/File Format/Other), please list them in the Additional Comment box of the Submit tab .
Summary of Proposed Changes Current Citations/Applications
[Pubmed ID: 18545707 ],
Ross-Ibarra J, Wright SI, Foxe JP, Kawabe A, DeRose-Wilson L, Gos G, Charlesworth D, Gaut BS ,
Patterns of polymorphism and demographic history in natural populations of Arabidopsis lyrata. ,
PLoS One ,
06-11-2008 ,
https://www.ncbi.nlm.nih.gov/pubmed/?term=18545707, Primary Citation
[Pubmed ID: 34930524 ],
Wolf E, Gaquerel E, Scharmann M, Yant L, Koch MA ,
Evolutionary footprints of a cold relic in a rapidly warming world. ,
Elife ,
12-21-2021 ,
https://www.ncbi.nlm.nih.gov/pubmed/?term=34930524, , Application
[Pubmed ID: 37467472 ],
Rougemont Q, Huber B, Martin SH, Whibley A, Estrada C, Solano D, Orpet R, McMillan WO, Frérot B, Joron M ,
Subtle Introgression Footprints at the End of the Speciation Continuum in a Clade of Heliconius Butterflies. ,
Mol Biol Evol ,
07-05-2023 ,
https://www.ncbi.nlm.nih.gov/pubmed/?term=37467472, , Application