GSR: Simulator - MySSP

Basic Package Attributes
AttributeValue
Title MySSP
Short Description A program for the simulation of DNA sequence evolution across a phylogenetic tree
Long Description MySSP is a new program for the simulation of DNA sequence evolution across a phylogenetic tree. Although many programs are available for sequence simulation, MySSP is unique in its inclusion of indels, flexibility in allowing for non-stationary patterns, and output of ancestral sequences. Some of these features can individually be found in existing programs, but have not all have been previously available in a single package.
Version 1.0.3.5
Project Started 2006
Last Release 14 years, 6 months ago
Homepagehttp://www.rosenberglab.net/software.html
Citations Rosenberg MS, MySSP: non-stationary evolutionary sequence simulation, including indels., Evol Bioinform Online, 02-26-2007 [ Abstract, cited in PMC ]
GSR Certification

Accessibility
Documentation
Application
Support

Last evaluated03-21-2019 (576 days ago)
Author verificationThe basic description provided was derived from a website or publications by the GSR team and has not yet been verified by the simulation author. To modify this entry or add more information, propose changes to this simulator.
Detailed Attributes
Attribute CategoryAttribute
Target
Type of Simulated DataHaploid DNA Sequence,
VariationsSingle Nucleotide Variation, Insertion and Deletion,
Simulation MethodPhylogenetic,
Input
Data Type
File format
Output
Data TypeGenotype or Sequence (Including ancestral sequences),
Sequencing Reads
File FormatFasta or Fastq, NEXUS, Other (Mega),
Sample Type
Phenotype
Trait Type
Determinants
Evolutionary Features
Demographic
Population Size Changes
Gene Flow
Spatiality
Life Cycle
Mating System
Fecundity
Natural Selection
Determinant
Models
Recombination
Mutation ModelsMarkov DNA Evolution Models, Indels and Others, Heterogeneity among Sites,
Events Allowed
Other
InterfaceCommand-line, Graphical User Interface,
Development
Tested PlatformsWindows, Linux and Unix,
Language
License
GSR CertificationDocumentation,

No example publication using MySSP has been provided.

Please propose new citations if you are aware of publications that use this software.


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