Nanopore sequence read simulator Long Description (required)
NanoSim is a fast and scalable read simulator that captures the technology-specific features of ONT data, and allows for adjustments upon improvement of nanopore sequencing technology. https://github.com/bcgsc/NanoSim
Step 1: Use the attribute tree to add new attributes or remove pre-selected attributes to describe the simulator.
Every sub-attribute is selected Not all sub-attributes are selectedFill Clear Expand Collapse Reset
Summary of Proposed Changes Step 2: Review list of proposed attribute addition(s) and subtraction(s).
Can't Find the Attribute You Are Looking For? If you would like to propose an attribute that you cannot find in the tree above, or if you would like to add a clarification to one or more attributes for this simulator (e.g. a specific file format for attribute /Output/File Format/Other), please list them in the Additional Comment box of the Submit tab .
Summary of Proposed Changes Current Citations/Applications
[Pubmed ID: 28327957 ],
Yang C, Chu J, Warren RL, Birol I ,
NanoSim: nanopore sequence read simulator based on statistical characterization. ,
Gigascience ,
04-01-2017 ,
https://www.ncbi.nlm.nih.gov/pubmed/?term=28327957, Primary Citation
[Pubmed ID: 37387129 ],
Mikalsen AJ, Zola J ,
Coriolis: enabling metagenomic classification on lightweight mobile devices. ,
Bioinformatics ,
06-30-2023 ,
https://www.ncbi.nlm.nih.gov/pubmed/?term=37387129, , Application
[Pubmed ID: 37546854 ],
Pardo-Palacios FJ, Wang D, Reese F, Diekhans M, Carbonell-Sala S, Williams B, Loveland JE, De María M, Adams MS, Balderrama-Gutierrez G, et al. ,
Systematic assessment of long-read RNA-seq methods for transcript identification and quantification. ,
bioRxiv ,
07-27-2023 ,
https://www.ncbi.nlm.nih.gov/pubmed/?term=37546854, , Application