GSR: Simulator - NEOGEN

Basic Package Attributes
AttributeValue
Title NEOGEN
Short Description A tool to predict genetic effective population size (Ne) for species with generational overlap and to assist empirical Ne study design
Long Description NeOGen (genetic Ne for Overlapping Generations analysis; pronounced Neo-gen) is point-&-click genetic effective population size (Ne) and demographic modelling software. The software, initially designed for sharks, is applicable to many overlapping-generation species with moderate to low population sizes and fecundity (such as mammals). NeOGen provides a cohesive linkage disequilibrium genetic Ne estimate (Ne.LD) analysis and population simulation framework that simulates both the demography and genetic composition of a population, given a small subset of fundamental species-specific life-history, demographic and genetic priors. NeOGen then guides the researchers in-silico to establish a tractable sampling regime, resulting in the numbers of samples and loci required to give accurate and precise Ne.LD estimates when empirical sampling is performed in the field.
Version 1.3.0.6a1
Last Release 1 year, 10 months ago
Homepagehttp://www.molecularfisherieslaboratory.com.au/neogen-v1-3-0-6-a1-software/
Citations Blower DC, Riginos C, Ovenden JR, neogen: A tool to predict genetic effective population size (N<sub>e</sub> ) for species with generational overlap and to assist empirical N<sub>e</sub> study design., Mol Ecol Resour, 01-01-2019 [ Abstract, cited in PMC ]
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Detailed Attributes
Attribute CategoryAttribute
Target
Type of Simulated Data
Variations
Simulation Method
Input
Data Type
File format
Output
Data Type
Sequencing Reads
File Format
Sample Type
Phenotype
Trait Type
Determinants
Evolutionary Features
Demographic
Population Size Changes
Gene Flow
Spatiality
Life Cycle
Mating System
Fecundity
Natural Selection
Determinant
Models
Recombination
Mutation Models
Events Allowed
Other
Interface
Development
Tested Platforms
Language
License
GSR Certification

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