GSR: Simulator - NeSSM

Basic Package Attributes
AttributeValue
Title NeSSM
Short Description A Next-Generation Sequencing Simulator for Metagenomics
Long Description NeSSM is a tool to generate Next-Generation Sequencing (NGS) reads with parameters set by users. The goal of NeSSM is to generate metagenome sequencing reads close to the reality. Currently, 454, Illumina sequencing platforms are supported. It can help develop methods or systems for metagenomics analysis.
Last Release 7 years, 8 months ago
Homepagehttp://cbb.sjtu.edu.cn/~ccwei/pub/software/NeSSM.php
Citations Jia B, Xuan L, Cai K, Hu Z, Ma L, Wei C, NeSSM: a Next-generation Sequencing Simulator for Metagenomics., PLoS One, 10-04-2013 [ Abstract, cited in PMC ]
GSR Certification

Accessibility
Documentation
Application
Support

Last evaluated05-13-2021 (29 days ago)
Author verificationThe basic description provided was derived from a website or publications by the GSR team and has not yet been verified by the simulation author. To modify this entry or add more information, propose changes to this simulator.
Detailed Attributes
Attribute CategoryAttribute
Target
Type of Simulated DataSequencing Reads,
Variations
Simulation MethodResample Existing Data,
Input
Data Type
File format
Output
Data Type
Sequencing Reads
File FormatSAM or BAM,
Sample Type
Phenotype
Trait Type
Determinants
Evolutionary Features
Demographic
Population Size Changes
Gene Flow
Spatiality
Life Cycle
Mating System
Fecundity
Natural Selection
Determinant
Models
Recombination
Mutation Models
Events Allowed
Other
InterfaceCommand-line,
Development
Tested Platforms
LanguageC or C++, Perl,
License
GSR CertificationDocumentation,

No example publication using NeSSM has been provided.

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