GSR: Simulator - nf-core/readsimulator

AttributeValue
Titlenf-core/readsimulator
Short Descriptionnf-core Nextflow pipeline for simulating sequencing reads.
Long Descriptionnf-core/readsimulator is a standardized Nextflow workflow for simulating amplicon, target capture, metagenome, and whole-genome sequencing reads, wrapping read simulators and nf-core infrastructure for reproducible execution.
KeywordsNextflow; nf-core; read simulation; amplicon; target capture; metagenome; whole genome sequencing; pipeline
Version1.0.1
Homepagehttps://nf-co.re/readsimulator
Citations
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Author verificationThe basic description provided was derived from a website or publications by the GSR team and has not yet been verified by the simulation author. To modify this entry or add more information, propose changes to this simulator.
Attribute CategoryAttribute
Target
Type of Simulated DataHaploid DNA Sequence, Sequencing Reads,
Variations
Simulation Method
Input
Data TypeReference genome,
File format
Output
Data TypeGenotype or Sequence,
Sequencing Reads
File FormatFasta or Fastq,
Sample Type
Phenotype
Trait Type
Determinants
Evolutionary Features
Demographic
Population Size Changes
Gene Flow
Spatiality
Life Cycle
Mating System
Fecundity
Natural Selection
Determinant
Models
Recombination
Mutation Models
Events Allowed
Other
InterfaceCommand-line, Script-based,
Development
Tested PlatformsLinux and Unix,
Language
License
GSR Certification

Number of Primary Citations: 0

Number of Non-Primary Citations: 0

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