GSR: Simulator - PARA-suite

AttributeValue
Title PARA-suite
Short Description PAR-CLIP specific sequence read simulation and processing
Long Description PAR-CLIP Analyzing suite. Useful tools for short and error prone sequence read handling. Note, that the PARA-suite addon of the Burrows-Wheeler Aligner (BWA) is necessary for the mapping tool of the PARA-suite.
Last Release 9 years ago
Homepagehttps://github.com/akloetgen/PARA-suite
Citations Kloetgen A, Borkhardt A, Hoell JI, McHardy AC, The PARA-suite: PAR-CLIP specific sequence read simulation and processing., PeerJ, Oct. 27, 2016 [ Abstract, cited in PMC ]
GSR Certification

✔ Accessibility
✔ Documentation
Application
✔ Support

Last evaluatedMay 11, 2021 (1587 days ago)
Author verificationThe basic description provided was derived from a website or publications by the GSR team and has not yet been verified by the simulation author. To modify this entry or add more information, propose changes to this simulator.
Attribute CategoryAttribute
Target
Type of Simulated DataHaploid DNA Sequence,
VariationsSingle Nucleotide Variation,
Simulation MethodResample Existing Data,
Input
Data Type
File format
Output
Data TypeGenotype or Sequence,
Sequencing ReadsIllumina,
File FormatSAM or BAM,
Sample Type
Phenotype
Trait Type
Determinants
Evolutionary Features
Demographic
Population Size Changes
Gene Flow
Spatiality
Life Cycle
Mating System
Fecundity
Natural Selection
Determinant
Models
Recombination
Mutation Models
Events Allowed
Other
InterfaceCommand-line,
Development
Tested Platforms
LanguageJava,
LicenseGNU Public License,
GSR CertificationAccessibility, Documentation, Support,

Number of Primary Citations: 1

Number of Non-Primary Citations: 0

No example publication using PARA-suite has been provided.

Please propose new citations if you are aware of publications that use this software.


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