GSR: Simulator - PARA-suite
Attribute | Value |
---|---|
Title | PARA-suite |
Short Description | PAR-CLIP specific sequence read simulation and processing |
Long Description | PAR-CLIP Analyzing suite. Useful tools for short and error prone sequence read handling. Note, that the PARA-suite addon of the Burrows-Wheeler Aligner (BWA) is necessary for the mapping tool of the PARA-suite. |
Last Release | 7 years, 6 months ago |
Homepage | https://github.com/akloetgen/PARA-suite |
Citations | Kloetgen A, Borkhardt A, Hoell JI, McHardy AC, The PARA-suite: PAR-CLIP specific sequence read simulation and processing., PeerJ, 10-27-2016 [ Abstract, cited in PMC ] |
GSR Certification | ✔ Accessibility |
Last evaluated | 05-11-2021 (1068 days ago) |
Author verification | The basic description provided was derived from a website or publications by the GSR team and has not yet been verified by the simulation author. To modify this entry or add more information, propose changes to this simulator. |
Attribute Category | Attribute |
---|---|
Target | |
Type of Simulated Data | Haploid DNA Sequence, |
Variations | Single Nucleotide Variation, |
Simulation Method | Resample Existing Data, |
Input | |
Data Type | |
File format | |
Output | |
Data Type | Genotype or Sequence, |
Sequencing Reads | Illumina, |
File Format | SAM or BAM, |
Sample Type | |
Phenotype | |
Trait Type | |
Determinants | |
Evolutionary Features | |
Demographic | |
Population Size Changes | |
Gene Flow | |
Spatiality | |
Life Cycle | |
Mating System | |
Fecundity | |
Natural Selection | |
Determinant | |
Models | |
Recombination | |
Mutation Models | |
Events Allowed | |
Other | |
Interface | Command-line, |
Development | |
Tested Platforms | |
Language | Java, |
License | GNU Public License, |
GSR Certification | Accessibility, Documentation, Support, |
Number of Primary Citations: 1
Number of Non-Primary Citations: 0
No example publication using PARA-suite has been provided.
Please propose new citations if you are aware of publications that use this software.