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GSR: Simulator - piBUSS
| Attribute | Value |
|---|---|
| Title | piBUSS |
| Short Description | a parallel BEAST/BEAGLE utility for sequence simulation under complex evolutionary scenarios |
| Long Description | πBUSS is a BEAST/BEAGLE utility for sequence simulation, which provides an easy to use interface that allows flexible and extensible phylogenetic data fabrication, delegating computationally intensive tasks to the BEAGLE library and thus making full use of multi-core architectures. |
| Last Release | 10 years, 6 months ago |
| Homepage | https://rega.kuleuven.be/cev/ecv/software/pibuss |
| Citations | Bielejec F, Lemey P, Carvalho LM, Baele G, Rambaut A, Suchard MA, πBUSS: a parallel BEAST/BEAGLE utility for sequence simulation under complex evolutionary scenarios., BMC Bioinformatics, 05-07-2014 [ Abstract, cited in PMC ] |
| GSR Certification | Accessibility |
| Last evaluated | 05-15-2023 (334 days ago) |
| Author verification | The basic description provided was derived from a website or publications by the GSR team and has not yet been verified by the simulation author. To modify this entry or add more information, propose changes to this simulator. |
| Attribute Category | Attribute |
|---|---|
| Target | |
| Type of Simulated Data | Protein Sequence, |
| Variations | Amino acid variation, |
| Simulation Method | Standard Coalescent, Phylogenetic, |
| Input | |
| Data Type | |
| File format | |
| Output | |
| Data Type | Phylogenetic Tree, |
| Sequencing Reads | |
| File Format | |
| Sample Type | |
| Phenotype | |
| Trait Type | |
| Determinants | |
| Evolutionary Features | |
| Demographic | |
| Population Size Changes | |
| Gene Flow | |
| Spatiality | |
| Life Cycle | |
| Mating System | |
| Fecundity | |
| Natural Selection | |
| Determinant | |
| Models | |
| Recombination | |
| Mutation Models | |
| Events Allowed | |
| Other | |
| Interface | Command-line, Graphical User Interface, |
| Development | |
| Tested Platforms | |
| Language | Java, |
| License | |
| GSR Certification | Documentation, Application, |
Number of Primary Citations: 1
Number of Non-Primary Citations: 5
The following 5 publications are selected examples of applications that used piBUSS.
2022
Patrono LV, Vrancken B, Budt M, Düx A, Lequime S, Boral S, Gilbert MTP, Gogarten JF, Hoffmann L, Horst D, et al., Archival influenza virus genomes from Europe reveal genomic variability during the 1918 pandemic., Nat Commun, 05-10-2022 [Abstract]
Patrono LV, Vrancken B, Budt M, Düx A, Lequime S, Boral S, Gilbert MTP, Gogarten JF, Hoffmann L, Horst D, et al., Archival influenza virus genomes from Europe reveal genomic variability during the 1918 pandemic., Nat Commun, 05-10-2022 [Abstract]
2020
Huang K, Zhang Y, Han Z, Zhou X, Song Y, Wang D, Zhu S, Yan D, Xu W, Xu W, Global Spread of the B5 Subgenotype EV-A71 and the Phylogeographical Analysis of Chinese Migration Events., Front Cell Infect Microbiol, 09-25-2020 [Abstract]
Huang K, Zhang Y, Han Z, Zhou X, Song Y, Wang D, Zhu S, Yan D, Xu W, Xu W, Global Spread of the B5 Subgenotype EV-A71 and the Phylogeographical Analysis of Chinese Migration Events., Front Cell Infect Microbiol, 09-25-2020 [Abstract]
2019
Bletsa M, Suchard MA, Ji X, Gryseels S, Vrancken B, Baele G, Worobey M, Lemey P, Divergence dating using mixed effects clock modelling: An application to HIV-1., Virus Evol, 09-05-2019 [Abstract]