GSR: Simulator - pIRS
Attribute | Value |
---|---|
Title | pIRS |
Short Description | Profile-based Illumina pair-end reads simulator |
Long Description | It simulates Illumina reads with empirical Base-Calling and GC%-depth profiles trained from real re-sequencing data. It considers error & quality distributions, as well as coverage bias patterns. In addition, pIRS also comes with a tool to simulate the heterozygous diploid genomes. |
Version | 1.11 |
Project Started | 2012 |
Last Release | 7 years, 2 months ago |
Homepage | https://code.google.com/p/pirs/ |
Citations | Hu X, Yuan J, Shi Y, Lu J, Liu B, Li Z, Chen Y, Mu D, Zhang H, Li N, Yue Z, et al., pIRS: Profile-based Illumina pair-end reads simulator., Bioinformatics, 06-01-2012 [ Abstract, cited in PMC ] |
GSR Certification | ✔ Accessibility |
Last evaluated | 06-14-2018 (938 days ago) |
Attribute Category | Attribute |
---|---|
Target | |
Type of Simulated Data | Diploid DNA Sequence, Haploid DNA Sequence, Sequencing Reads, |
Variations | Genotype or Sequencing Error, |
Simulation Method | Resample Existing Data, |
Input | |
Data Type | Saved simulation, |
File format | Program Specific, |
Output | |
Data Type | Genotype or Sequence, |
Sequencing Reads | |
File Format | Fasta or Fastq, |
Sample Type | |
Phenotype | |
Trait Type | |
Determinants | |
Evolutionary Features | |
Demographic | |
Population Size Changes | |
Gene Flow | |
Spatiality | |
Life Cycle | |
Mating System | |
Fecundity | |
Natural Selection | |
Determinant | |
Models | |
Recombination | |
Mutation Models | |
Events Allowed | |
Other | |
Interface | Command-line, |
Development | |
Tested Platforms | Linux and Unix, |
Language | C or C++, Perl, |
License | BSD, |
GSR Certification | Accessibility, Documentation, Support, |
No example publication using pIRS has been provided.
Please propose new citations if you are aware of publications that use this software.