GSR: Simulator - pIRS
| Attribute | Value |
|---|---|
| Title | pIRS |
| Short Description | Profile-based Illumina pair-end reads simulator |
| Long Description | It simulates Illumina reads with empirical Base-Calling and GC%-depth profiles trained from real re-sequencing data. It considers error & quality distributions, as well as coverage bias patterns. In addition, pIRS also comes with a tool to simulate the heterozygous diploid genomes. |
| Version | 1.11 |
| Project Started | 2012 |
| Last Release | 7 years, 2 months ago |
| Homepage | https://code.google.com/p/pirs/ |
| Citations | Hu X, Yuan J, Shi Y, Lu J, Liu B, Li Z, Chen Y, Mu D, Zhang H, Li N, Yue Z, et al., pIRS: Profile-based Illumina pair-end reads simulator., Bioinformatics, 06-01-2012 [ Abstract, cited in PMC ] |
| GSR Certification | ✔ Accessibility |
| Last evaluated | 06-14-2018 (938 days ago) |
| Attribute Category | Attribute |
|---|---|
| Target | |
| Type of Simulated Data | Diploid DNA Sequence, Haploid DNA Sequence, Sequencing Reads, |
| Variations | Genotype or Sequencing Error, |
| Simulation Method | Resample Existing Data, |
| Input | |
| Data Type | Saved simulation, |
| File format | Program Specific, |
| Output | |
| Data Type | Genotype or Sequence, |
| Sequencing Reads | |
| File Format | Fasta or Fastq, |
| Sample Type | |
| Phenotype | |
| Trait Type | |
| Determinants | |
| Evolutionary Features | |
| Demographic | |
| Population Size Changes | |
| Gene Flow | |
| Spatiality | |
| Life Cycle | |
| Mating System | |
| Fecundity | |
| Natural Selection | |
| Determinant | |
| Models | |
| Recombination | |
| Mutation Models | |
| Events Allowed | |
| Other | |
| Interface | Command-line, |
| Development | |
| Tested Platforms | Linux and Unix, |
| Language | C or C++, Perl, |
| License | BSD, |
| GSR Certification | Accessibility, Documentation, Support, |
No example publication using pIRS has been provided.
Please propose new citations if you are aware of publications that use this software.