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GSR: Simulator - PReFerSim
| Attribute | Value |
|---|---|
| Title | PReFerSim |
| Short Description | PReFerSim is an ANSI C program that performs forward simulations under the PRF model. |
| Long Description | PReFerSim is an ANSI C program that performs forward simulations under the PRF model. PReFerSim models changes in population size, inbreeding, dominance, and distributions of selective effects. PReFerSim allows the tracking of summaries for genetic variations over time along with the output trajectories of selected alleles. |
| Version | 1.0 |
| Project Started | 2019 |
| Last Release | 6 years ago |
| Homepage | https://github.com/LohmuellerLab/PReFerSim |
| Citations | Ortega-Del Vecchyo D, Marsden CD, Lohmueller KE, PReFerSim: fast simulation of demography and selection under the Poisson Random Field model., Bioinformatics, Nov. 15, 2016 [ Abstract, cited in PMC ] |
| GSR Certification | ✔ Accessibility |
| Last evaluated | Feb. 14, 2022 (1285 days ago) |
| Author verification | The basic description provided was derived from a website or publications by the GSR team and has not yet been verified by the simulation author. To modify this entry or add more information, propose changes to this simulator. |
| Attribute Category | Attribute |
|---|---|
| Target | |
| Type of Simulated Data | Genotype at Genetic Markers, Haploid DNA Sequence, |
| Variations | Biallelic Marker, |
| Simulation Method | Forward-time, |
| Input | |
| Data Type | |
| File format | |
| Output | |
| Data Type | |
| Sequencing Reads | |
| File Format | |
| Sample Type | |
| Phenotype | |
| Trait Type | |
| Determinants | |
| Evolutionary Features | |
| Demographic | |
| Population Size Changes | Constant Size, Exponential Growth or Decline, Logistic Growth, Bottleneck, Carrying Capacity, User Defined, |
| Gene Flow | |
| Spatiality | |
| Life Cycle | |
| Mating System | |
| Fecundity | |
| Natural Selection | |
| Determinant | |
| Models | Directional Selection, Balancing Selection, Multi-locus models, |
| Recombination | |
| Mutation Models | |
| Events Allowed | |
| Other | |
| Interface | |
| Development | |
| Tested Platforms | Mac OS X, Linux and Unix, |
| Language | C or C++, |
| License | GNU Public License, |
| GSR Certification | Accessibility, Documentation, Support, |
Number of Primary Citations: 1
Number of Non-Primary Citations: 0
No example publication using PReFerSim has been provided.
Please propose new citations if you are aware of publications that use this software.