GSR: Simulator - PrinTE

AttributeValue
TitlePrinTE
Short DescriptionForward-time simulator for transposable element-driven genome evolution.
Long DescriptionPrinTE simulates whole-genome sequence evolution across generations with customizable transposable element insertion, excision, mutation, expansion, and contraction dynamics, producing genome FASTA, annotation BED, and evolved TE library outputs.
Keywordstransposable elements; genome evolution; forward-time simulation; plant genomes; Python; GPL-3.0
Versionv1.0.0
Homepagehttps://github.com/cwb14/PrinTE
Citations
GSR Certification This simulator has not yet been evaluated for GSR Certification. Learn more about or request GSR Certification.
Author verificationThe basic description provided was derived from a website or publications by the GSR team and has not yet been verified by the simulation author. To modify this entry or add more information, propose changes to this simulator.
Attribute CategoryAttribute
Target
Type of Simulated DataHaploid DNA Sequence, Sequencing Reads,
VariationsInsertion and Deletion,
Simulation MethodForward-time,
Input
Data TypeReference genome,
File format
Output
Data TypeGenotype or Sequence,
Sequencing Reads
File FormatFasta or Fastq,
Sample Type
Phenotype
Trait Type
Determinants
Evolutionary Features
Demographic
Population Size Changes
Gene Flow
Spatiality
Life Cycle
Mating System
Fecundity
Natural Selection
Determinant
Models
Recombination
Mutation Models
Events Allowed
Other
InterfaceCommand-line, Script-based,
Development
Tested PlatformsLinux and Unix,
LanguagePython,
LicenseGNU Public License,
GSR Certification

Number of Primary Citations: 0

Number of Non-Primary Citations: 0

No example publication using PrinTE has been provided.

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