GSR: Simulator - py_ped_sim

AttributeValue
Titlepy_ped_sim
Short DescriptionForward pedigree and genetic simulator for complex family structures.
Long Descriptionpy_ped_sim simulates pedigree structures and genome inheritance on graph-based family pedigrees, using SLiM-backed forward simulation to generate genetic information for kinship, inheritance, and complex family pedigree analyses.
Keywordspedigree simulation; forward-time simulation; kinship; family genetics; SLiM; Python; GPL-3.0
Version3.0
Homepagehttps://github.com/MiguelGuardado/py_ped_sim
Citations
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Author verificationThe basic description provided was derived from a website or publications by the GSR team and has not yet been verified by the simulation author. To modify this entry or add more information, propose changes to this simulator.
Attribute CategoryAttribute
Target
Type of Simulated DataGenotype at Genetic Markers,
VariationsSingle Nucleotide Variation,
Simulation MethodForward-time,
Input
Data Type
File format
Output
Data TypeGenotype or Sequence,
Sequencing Reads
File Format
Sample Type
Phenotype
Trait Type
Determinants
Evolutionary Features
Demographic
Population Size Changes
Gene Flow
Spatiality
Life Cycle
Mating System
Fecundity
Natural Selection
Determinant
Models
Recombination
Mutation Models
Events Allowed
Other
InterfaceCommand-line, Script-based,
Development
Tested PlatformsLinux and Unix,
LanguagePython,
LicenseGNU Public License,
GSR Certification

Number of Primary Citations: 0

Number of Non-Primary Citations: 0

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