GSR: Simulator - Pyvolve
Attribute | Value |
---|---|
Title | Pyvolve |
Short Description | A Flexible Python Module for Simulating Sequences along Phylogenies |
Long Description | Pyvolve is an open-source Python module for simulating sequences along a phylogenetic tree according to continuous-time Markov models of sequence evolution. |
Version | 1.0.3 |
Project Started | 2009 |
Last Release | 1 month, 2 weeks ago |
Homepage | https://github.com/sjspielman/pyvolve |
Citations | Spielman SJ, Wilke CO, Pyvolve: A Flexible Python Module for Simulating Sequences along Phylogenies., PLoS One, 09-23-2015 [ Abstract, cited in PMC ] |
GSR Certification | This simulator has not yet been evaluated for GSR Certification. Learn more about or request GSR Certification. |
Author verification | The basic description provided was derived from a website or publications by the GSR team and has not yet been verified by the simulation author. To modify this entry or add more information, propose changes to this simulator. |
Attribute Category | Attribute |
---|---|
Target | |
Type of Simulated Data | |
Variations | |
Simulation Method | |
Input | |
Data Type | |
File format | |
Output | |
Data Type | |
Sequencing Reads | |
File Format | |
Sample Type | |
Phenotype | |
Trait Type | |
Determinants | |
Evolutionary Features | |
Demographic | |
Population Size Changes | |
Gene Flow | |
Spatiality | |
Life Cycle | |
Mating System | |
Fecundity | |
Natural Selection | |
Determinant | |
Models | |
Recombination | |
Mutation Models | |
Events Allowed | |
Other | |
Interface | |
Development | |
Tested Platforms | |
Language | |
License | |
GSR Certification |
No example publication using Pyvolve has been provided.
Please propose new citations if you are aware of publications that use this software.