GSR: Simulator - Pyvolve
| Attribute | Value |
|---|---|
| Title | Pyvolve |
| Short Description | A Flexible Python Module for Simulating Sequences along Phylogenies |
| Long Description | Pyvolve is an open-source Python module for simulating sequences along a phylogenetic tree according to continuous-time Markov models of sequence evolution. |
| Version | 1.0.3 |
| Project Started | 2009 |
| Last Release | 6 months, 3 weeks ago |
| Homepage | https://github.com/sjspielman/pyvolve |
| Citations | Spielman SJ, Wilke CO, Pyvolve: A Flexible Python Module for Simulating Sequences along Phylogenies., PLoS One, 09-23-2015 [ Abstract, cited in PMC ] |
| GSR Certification | ✔ Accessibility |
| Last evaluated | 06-10-2021 (1 days ago) |
| Author verification | The basic description provided was derived from a website or publications by the GSR team and has not yet been verified by the simulation author. To modify this entry or add more information, propose changes to this simulator. |
| Attribute Category | Attribute |
|---|---|
| Target | |
| Type of Simulated Data | |
| Variations | |
| Simulation Method | |
| Input | |
| Data Type | |
| File format | |
| Output | |
| Data Type | |
| Sequencing Reads | |
| File Format | |
| Sample Type | |
| Phenotype | |
| Trait Type | |
| Determinants | |
| Evolutionary Features | |
| Demographic | |
| Population Size Changes | |
| Gene Flow | |
| Spatiality | |
| Life Cycle | |
| Mating System | |
| Fecundity | |
| Natural Selection | |
| Determinant | |
| Models | |
| Recombination | |
| Mutation Models | |
| Events Allowed | |
| Other | |
| Interface | |
| Development | |
| Tested Platforms | |
| Language | |
| License | |
| GSR Certification | Accessibility, Documentation, Support, |
No example publication using Pyvolve has been provided.
Please propose new citations if you are aware of publications that use this software.