GSR: Simulator - Pyvolve

Basic Package Attributes
AttributeValue
Title Pyvolve
Short Description A Flexible Python Module for Simulating Sequences along Phylogenies
Long Description Pyvolve is an open-source Python module for simulating sequences along a phylogenetic tree according to continuous-time Markov models of sequence evolution.
Version 1.0.3
Project Started 2009
Last Release 1 month, 2 weeks ago
Homepagehttps://github.com/sjspielman/pyvolve
Citations Spielman SJ, Wilke CO, Pyvolve: A Flexible Python Module for Simulating Sequences along Phylogenies., PLoS One, 09-23-2015 [ Abstract, cited in PMC ]
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Author verificationThe basic description provided was derived from a website or publications by the GSR team and has not yet been verified by the simulation author. To modify this entry or add more information, propose changes to this simulator.
Detailed Attributes
Attribute CategoryAttribute
Target
Type of Simulated Data
Variations
Simulation Method
Input
Data Type
File format
Output
Data Type
Sequencing Reads
File Format
Sample Type
Phenotype
Trait Type
Determinants
Evolutionary Features
Demographic
Population Size Changes
Gene Flow
Spatiality
Life Cycle
Mating System
Fecundity
Natural Selection
Determinant
Models
Recombination
Mutation Models
Events Allowed
Other
Interface
Development
Tested Platforms
Language
License
GSR Certification

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