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GSR: Simulator - ReSeq
| Attribute | Value |
|---|---|
| Title | ReSeq |
| Short Description | ReSeq simulates realistic Illumina high-throughput sequencing data |
| Long Description | Real Sequence Reproducer shortens the gap between simulated and real data evaluations by adequately reproducing key statistics of real data, like the coverage profile, systematic errors and the k-mer spectrum. When these characteristics are translated into new synthetic computational experiments (i.e. simulated data), the performance can be more accurately estimated. Combining our simulator and real data gives two valuable perspectives on the performance of tools to minimize biases. |
| Keywords | Genomic; High-throughput sequencing; Illumina; Simulation |
| Version | 1.1 |
| Project Started | 2020 |
| Last Release | 4 years, 9 months ago |
| Homepage | https://github.com/schmeing/ReSeq |
| Citations | Schmeing S, Robinson MD, ReSeq simulates realistic Illumina high-throughput sequencing data., Genome Biol, Feb. 19, 2021 [ Abstract, cited in PMC ] |
| GSR Certification | ✔ Accessibility |
| Last evaluated | Aug. 5, 2022 (1112 days ago) |
| Author verification | The basic description provided was derived from a website or publications by the GSR team and has not yet been verified by the simulation author. To modify this entry or add more information, propose changes to this simulator. |
| Attribute Category | Attribute |
|---|---|
| Target | |
| Type of Simulated Data | |
| Variations | |
| Simulation Method | |
| Input | |
| Data Type | |
| File format | SAM or BAM, |
| Output | |
| Data Type | |
| Sequencing Reads | Illumina, |
| File Format | |
| Sample Type | |
| Phenotype | |
| Trait Type | |
| Determinants | |
| Evolutionary Features | |
| Demographic | |
| Population Size Changes | |
| Gene Flow | |
| Spatiality | |
| Life Cycle | |
| Mating System | |
| Fecundity | |
| Natural Selection | |
| Determinant | |
| Models | |
| Recombination | |
| Mutation Models | |
| Events Allowed | |
| Other | |
| Interface | Command-line, |
| Development | |
| Tested Platforms | Linux and Unix, |
| Language | C or C++, Python, Other, |
| License | MIT, |
| GSR Certification | Accessibility, Documentation, Support, |
Number of Primary Citations: 1
Number of Non-Primary Citations: 0
No example publication using ReSeq has been provided.
Please propose new citations if you are aware of publications that use this software.