GSR: Simulator - RNA Seq Simulator

AttributeValue
Title RNA Seq Simulator
Short Description RSS takes SAM alignment files from RNA-Seq data and simulates over dispersed, multiple replica, differential, non-stranded RNA-Seq datasets.
Long Description RSS takes SAM alignment files from RNA-Seq data and simulates over dispersed, multiple replica, differential, non-stranded RNA-Seq datasets.
Project Started 2011
Last Release 14 years, 2 months ago
Homepagehttps://github.com/HuntsmanCancerInstitute/USeq
Citations
GSR Certification

✔ Accessibility
✔ Documentation
Application
✔ Support

Last evaluatedFeb. 26, 2020 (2027 days ago)
Author verificationThe basic description provided was derived from a website or publications by the GSR team and has not yet been verified by the simulation author. To modify this entry or add more information, propose changes to this simulator.
Attribute CategoryAttribute
Target
Type of Simulated DataRNA,
Variations
Simulation Method
Input
Data Type
File format
Output
Data TypeGenotype or Sequence,
Sequencing Reads
File Format
Sample Type
Phenotype
Trait Type
Determinants
Evolutionary Features
Demographic
Population Size Changes
Gene Flow
Spatiality
Life Cycle
Mating System
Fecundity
Natural Selection
Determinant
Models
Recombination
Mutation Models
Events Allowed
Other
InterfaceCommand-line,
Development
Tested PlatformsMac OS X, Linux and Unix,
LanguageJava, R,
LicenseBSD,
GSR CertificationAccessibility, Documentation, Support,

Number of Primary Citations: 0

Number of Non-Primary Citations: 0

No example publication using RNA Seq Simulator has been provided.

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