GSR: Simulator - RNA Seq Simulator

Basic Package Attributes
AttributeValue
Title RNA Seq Simulator
Short Description RSS takes SAM alignment files from RNA-Seq data and simulates over dispersed, multiple replica, differential, non-stranded RNA-Seq datasets.
Long Description RSS takes SAM alignment files from RNA-Seq data and simulates over dispersed, multiple replica, differential, non-stranded RNA-Seq datasets.
Project Started 2011
Last Release 9 years, 2 months ago
Homepagehttps://github.com/HuntsmanCancerInstitute/USeq
Citations
GSR Certification

Accessibility
Documentation
Application
Support

Last evaluated02-26-2020 (234 days ago)
Author verificationThe basic description provided was derived from a website or publications by the GSR team and has not yet been verified by the simulation author. To modify this entry or add more information, propose changes to this simulator.
Detailed Attributes
Attribute CategoryAttribute
Target
Type of Simulated DataRNA,
Variations
Simulation Method
Input
Data Type
File format
Output
Data TypeGenotype or Sequence,
Sequencing Reads
File Format
Sample Type
Phenotype
Trait Type
Determinants
Evolutionary Features
Demographic
Population Size Changes
Gene Flow
Spatiality
Life Cycle
Mating System
Fecundity
Natural Selection
Determinant
Models
Recombination
Mutation Models
Events Allowed
Other
InterfaceCommand-line,
Development
Tested PlatformsMac OS X, Linux and Unix,
LanguageJava, R,
LicenseBSD,
GSR CertificationAccessibility, Documentation, Support,

No example publication using RNA Seq Simulator has been provided.

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